Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G03
         (204 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    20   2.6  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    19   7.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    19   7.8  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 127 IEINYFIYIY 98
           I INYFI++Y
Sbjct: 17  ILINYFIFLY 26


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 203 CILFAGKAMNFVATLNSNLH 144
           C+L A +A   +  L  N+H
Sbjct: 37  CVLQANRACILIKDLFDNVH 56


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 203 CILFAGKAMNFVATLNSNLH 144
           C+L A +A   +  L  N+H
Sbjct: 20  CVLQANRACILIKDLFDNVH 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,251
Number of Sequences: 438
Number of extensions: 762
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2785926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)