Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G02
         (258 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   3.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   3.7  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    20   4.9  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    20   4.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   6.5  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 173  RESRRKISSLEFDKYGKLNSEWVA 244
            R+  RKI SLE  +Y  L S  V+
Sbjct: 1110 RDLNRKIESLEKMQYPDLRSPAVS 1133


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 173  RESRRKISSLEFDKYGKLNSEWVA 244
            R+  RKI SLE  +Y  L S  V+
Sbjct: 1110 RDLNRKIESLEKMQYPDLRSPAVS 1133


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +3

Query: 99  ILPRKHKPYNHEQ 137
           +LP+ H+ ++H+Q
Sbjct: 10  MLPKYHQQFHHQQ 22


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +3

Query: 99  ILPRKHKPYNHEQ 137
           +LP+ H+ ++H+Q
Sbjct: 10  MLPKYHQQFHHQQ 22


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.4 bits (38), Expect = 6.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 134  AVEVLAYTSVG 166
            ++EVLAYTS G
Sbjct: 1174 SMEVLAYTSGG 1184


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,308
Number of Sequences: 336
Number of extensions: 923
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  4058134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)