Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_G02
(258 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 27 0.54
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 1.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 1.3
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 1.3
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 24 3.8
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 24 3.8
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 23 5.1
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 23 6.7
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 23 8.9
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 23 8.9
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 23 8.9
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 23 8.9
>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 26.6 bits (56), Expect = 0.54
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 252 GFNATHSEFNFPYLSNSKLEIFLLDSLYEPTDVYAST 142
GF+ + P+++N+ E L DSL E ++Y T
Sbjct: 141 GFHKPTDKIKIPFINNTAHESDLHDSLQEAINLYPDT 177
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 1.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 236 ILSLIFHIYQTPNSRSSFLIPSTSPPTYTRVPPLLMIVWFVF 111
I S IFHIY+T F S++ ++ P++ I W+ +
Sbjct: 269 IKSAIFHIYKTEGINGFFRGYSSN---MLKIIPVMSITWYTY 307
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 1.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 240 THSEFNFPYLSNSKLEIFLLDSLYEPTDVY 151
T FPYL NS+ L ++P++V+
Sbjct: 329 TEYRIAFPYLYNSRARSVALSEYHQPSNVF 358
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 1.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 148 RVYVGGLVEGIKKEDLE 198
R+YVGGL I+ DLE
Sbjct: 6 RIYVGGLSSSIESSDLE 22
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 23.8 bits (49), Expect = 3.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 213 LSNSKLEIFLLDSLYEPTDVYASTSTAHDCMVC 115
LS+S +DSLYE D Y S + A +C
Sbjct: 272 LSSSAQASIEIDSLYEGIDFYTSITRARFEELC 304
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 23.8 bits (49), Expect = 3.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 146 VPPLLMIVWFVFTR*DYFIINFS 78
+P L VWF+ D FI NFS
Sbjct: 376 LPELDKCVWFLLKNCDEFIENFS 398
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 23.4 bits (48), Expect = 5.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 212 YQTPNSRSSFLIPSTSPPTYTRVPPLLMIVWFVFTR 105
Y NS S PST T+ R PP + + + +R
Sbjct: 349 YAPSNSTLSSTPPSTLQLTFVRFPPPMQVENYASSR 384
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 23.0 bits (47), Expect = 6.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 145 TRVYVGGLVEGIKKEDLE 198
T V+VGGL + ++DL+
Sbjct: 297 TTVFVGGLASNLSEKDLQ 314
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 22.6 bits (46), Expect = 8.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 76 RLKLIIK*SYLVNTNHTIMSSGGTRVYVGGLVEGIKKE 189
R +++ L++ + T M+ GGTRV GG+ I +
Sbjct: 769 RWRVVTLSGQLIDKSGT-MTGGGTRVKKGGMSSAITSD 805
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 22.6 bits (46), Expect = 8.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 208 KLQTRDLPS*FPLR 167
KL +RDLPS F LR
Sbjct: 21 KLSSRDLPSVFDLR 34
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 22.6 bits (46), Expect = 8.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 206 TPNSRSSFLIPSTSPPTYTRVPP 138
TP S S IP+ PPT + P
Sbjct: 642 TPTSTSHIPIPTVLPPTQPVLEP 664
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 22.6 bits (46), Expect = 8.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 230 SLIFHIYQTPNSRSS 186
SL+FH TPN+R +
Sbjct: 16 SLVFHFTGTPNAREN 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 921,616
Number of Sequences: 5004
Number of extensions: 15351
Number of successful extensions: 49
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -