Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_G02
(258 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0008 - 30978448-30978593,30978673-30978733,30978822-309790... 27 2.7
03_06_0006 + 30963331-30963457,30963751-30964715,30965166-309653... 27 2.7
06_02_0152 - 12316242-12316248,12316634-12316800,12317689-123178... 26 3.6
02_05_0310 + 27769988-27770830 26 3.6
06_01_0309 - 2233573-2234556,2234670-2234721,2235406-2236391,223... 26 4.8
01_01_0164 + 1403635-1403708,1403960-1403999,1404103-1404178,140... 26 4.8
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 25 6.3
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132... 25 6.3
02_01_0304 + 2037718-2037939,2038169-2038384,2038862-2039329,203... 25 6.3
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 25 8.4
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 25 8.4
04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571 25 8.4
03_05_0200 - 21911260-21911322,21911655-21911705,21911756-219118... 25 8.4
>03_06_0008 -
30978448-30978593,30978673-30978733,30978822-30979007,
30979458-30980422,30980716-30980842
Length = 494
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -2
Query: 212 YQTPNSRSSFLIPSTSPPTYTRVPPLLMI 126
Y + ++ ++F+ PS+ P TY + PP+ ++
Sbjct: 298 YLSTHNSANFIRPSSLPLTYQQKPPITLL 326
>03_06_0006 +
30963331-30963457,30963751-30964715,30965166-30965351,
30965440-30965500,30965580-30965623
Length = 460
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -2
Query: 212 YQTPNSRSSFLIPSTSPPTYTRVPPLLMI 126
Y + ++ ++F+ PS+ P TY + PP+ ++
Sbjct: 298 YLSTHNSANFIRPSSLPLTYQQKPPITLL 326
>06_02_0152 -
12316242-12316248,12316634-12316800,12317689-12317800,
12317930-12317999,12318535-12318535,12318791-12319144
Length = 236
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 206 TPNSRSSFLIPSTSPPTYTRVP--PLLMIVW 120
TP S SS+ P++ PP T +P P + VW
Sbjct: 44 TPGSDSSYPTPTSIPPPPTSLPSTPTPVAVW 74
>02_05_0310 + 27769988-27770830
Length = 280
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 230 SLIFHIYQTPNSRSSFLIPSTSPPTYTRVPP 138
SL+ H + P+SR + P+ PP R PP
Sbjct: 239 SLVHHHHPPPSSRREPVAPAARPPA-PRTPP 268
>06_01_0309 -
2233573-2234556,2234670-2234721,2235406-2236391,
2237790-2238050
Length = 760
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 213 LSNSKLEIFLLDSLYEPTDVYASTSTA 133
+S S+ E+ +L S + D+YAS STA
Sbjct: 122 ISGSRKELGMLSSQTKGMDIYASRSTA 148
>01_01_0164 +
1403635-1403708,1403960-1403999,1404103-1404178,
1404680-1405827
Length = 445
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 112 NTNHTIMSSGGTRVYVGGLVEGIK 183
N N+ I+ G + VGGL++G+K
Sbjct: 147 NKNNNILKDQGKQGGVGGLIQGLK 170
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 197 SRSSFLIPSTSPPTYTRVPPL 135
S SS PS SPP+ +R PPL
Sbjct: 25 SSSSSPSPSPSPPSSSRKPPL 45
>02_04_0577 -
24011542-24011906,24012285-24012385,24013029-24013287,
24014176-24014264,24015331-24015419
Length = 300
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 173 RESRRKISSLEFDKYGKLNSEWVALNPP 256
R + R+I EF +G L S WVA PP
Sbjct: 12 RVTAREIED-EFRVFGVLRSVWVARKPP 38
>02_01_0304 +
2037718-2037939,2038169-2038384,2038862-2039329,
2039419-2040171
Length = 552
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 148 RVYVGGLVEGIKKEDLE 198
R++VGG+ EG+ DLE
Sbjct: 17 RIFVGGISEGVAAADLE 33
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 142 GTRVYVGGLVEGIKKEDLE 198
G+ VYVGG+ + EDL+
Sbjct: 110 GSEVYVGGISSDVSSEDLK 128
>11_01_0236 +
1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 142 GTRVYVGGLVEGIKKEDLE 198
G+ VYVGG+ + EDL+
Sbjct: 518 GSEVYVGGISSDVSSEDLK 536
>04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571
Length = 740
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 221 FHIYQTPNSRSSFLIPSTSPP 159
FH++ + S S FLI S+S P
Sbjct: 149 FHVHDSSRSCSKFLIASSSDP 169
>03_05_0200 -
21911260-21911322,21911655-21911705,21911756-21911851,
21911947-21912045,21913213-21913526,21913621-21913696,
21913788-21915136,21915344-21915944
Length = 882
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 237 HSEFNFPYLSNSKLEIFLLDSLYEPTD 157
HSE N+P L K E+ L+ + P++
Sbjct: 30 HSETNYPTLGPVKTEVIDLEEIASPSN 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,589,741
Number of Sequences: 37544
Number of extensions: 90829
Number of successful extensions: 289
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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