Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G02
         (258 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z85986-1|CAI19115.1|  164|Homo sapiens splicing factor, arginine...    27   8.2  
L10838-1|AAA36648.1|  164|Homo sapiens pre-mRNA splicing factor ...    27   8.2  
BT007017-1|AAP35663.1|  164|Homo sapiens splicing factor, argini...    27   8.2  
BC069018-1|AAH69018.1|  164|Homo sapiens splicing factor, argini...    27   8.2  
BC000914-1|AAH00914.1|  164|Homo sapiens splicing factor, argini...    27   8.2  
AF107405-1|AAD44523.1|  164|Homo sapiens pre-mRNA splicing facto...    27   8.2  

>Z85986-1|CAI19115.1|  164|Homo sapiens splicing factor,
           arginine/serine-rich 3 protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 206 FDKYGKLNSEWVALNPP 256
           F  YG L S WVA NPP
Sbjct: 30  FGYYGPLRSVWVARNPP 46


>L10838-1|AAA36648.1|  164|Homo sapiens pre-mRNA splicing factor
           protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 206 FDKYGKLNSEWVALNPP 256
           F  YG L S WVA NPP
Sbjct: 30  FGYYGPLRSVWVARNPP 46


>BT007017-1|AAP35663.1|  164|Homo sapiens splicing factor,
           arginine/serine-rich 3 protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 206 FDKYGKLNSEWVALNPP 256
           F  YG L S WVA NPP
Sbjct: 30  FGYYGPLRSVWVARNPP 46


>BC069018-1|AAH69018.1|  164|Homo sapiens splicing factor,
           arginine/serine-rich 3 protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 206 FDKYGKLNSEWVALNPP 256
           F  YG L S WVA NPP
Sbjct: 30  FGYYGPLRSVWVARNPP 46


>BC000914-1|AAH00914.1|  164|Homo sapiens splicing factor,
           arginine/serine-rich 3 protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 206 FDKYGKLNSEWVALNPP 256
           F  YG L S WVA NPP
Sbjct: 30  FGYYGPLRSVWVARNPP 46


>AF107405-1|AAD44523.1|  164|Homo sapiens pre-mRNA splicing factor
           protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 206 FDKYGKLNSEWVALNPP 256
           F  YG L S WVA NPP
Sbjct: 30  FGYYGPLRSVWVARNPP 46


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,702,572
Number of Sequences: 237096
Number of extensions: 540400
Number of successful extensions: 1393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 76,859,062
effective HSP length: 63
effective length of database: 61,922,014
effective search space used: 1362284308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)