Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_G02
(258 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 27 2.4
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 27 2.4
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 27 2.4
Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical p... 26 3.2
Z81533-5|CAB04337.1| 342|Caenorhabditis elegans Hypothetical pr... 26 3.2
U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 26 3.2
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 26 3.2
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 26 3.2
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 26 3.2
Z69885-5|CAA93756.2| 882|Caenorhabditis elegans Hypothetical pr... 25 5.6
AY064464-1|AAL40874.1| 882|Caenorhabditis elegans minibrain kin... 25 5.6
AC006723-4|AAK68423.1| 341|Caenorhabditis elegans Hypothetical ... 25 5.6
Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z68004-3|CAA91983.2| 380|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z81113-7|CAI79236.1| 351|Caenorhabditis elegans Hypothetical pr... 25 9.8
AY081955-1|AAL92523.1| 788|Caenorhabditis elegans MAT-1 protein. 25 9.8
AC006708-14|AAT81172.1| 273|Caenorhabditis elegans Metaphase-to... 25 9.8
AC006708-13|AAF60415.1| 788|Caenorhabditis elegans Metaphase-to... 25 9.8
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 206 FDKYGKLNSEWVALNPP 256
FD++G++ WVA PP
Sbjct: 23 FDRFGRIRKVWVARRPP 39
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 206 FDKYGKLNSEWVALNPP 256
FD++G++ WVA PP
Sbjct: 23 FDRFGRIRKVWVARRPP 39
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 206 FDKYGKLNSEWVALNPP 256
FD++G++ WVA PP
Sbjct: 23 FDRFGRIRKVWVARRPP 39
>Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical
protein Y69H2.12 protein.
Length = 528
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 245 MLPILSLIFHIYQTPNSRSSFLIPSTSPP 159
M+ +L LIF Y TP + ++ S +PP
Sbjct: 1 MIFLLFLIFPYYSTPQTTVEYVAASPNPP 29
>Z81533-5|CAB04337.1| 342|Caenorhabditis elegans Hypothetical
protein F36G9.8 protein.
Length = 342
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 242 LPILSLIFH-IYQTPNSRSSFLIPSTSPPTYTRVPPLLMI 126
+PI+SL+ I+ PNS++S+ I T+T + L M+
Sbjct: 260 IPIISLVVPLIFTIPNSQTSYFISLLCMSTHTFLGTLSML 299
>U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 218 HIYQTPNSRSSFLIPSTSPPTY 153
H Y TP S + IPS SP Y
Sbjct: 211 HSYYTPRSSQYYEIPSPSPDIY 232
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 218 HIYQTPNSRSSFLIPSTSPPTY 153
H Y TP S + IPS SP Y
Sbjct: 1851 HSYYTPRSSQYYEIPSPSPDIY 1872
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 218 HIYQTPNSRSSFLIPSTSPPTY 153
H Y TP S + IPS SP Y
Sbjct: 1952 HSYYTPRSSQYYEIPSPSPDIY 1973
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 218 HIYQTPNSRSSFLIPSTSPPTY 153
H Y TP S + IPS SP Y
Sbjct: 1952 HSYYTPRSSQYYEIPSPSPDIY 1973
>Z69885-5|CAA93756.2| 882|Caenorhabditis elegans Hypothetical
protein T04C10.1 protein.
Length = 882
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 242 LPILSLIFHIYQTPNSRSSFLIPSTSPPTYTRVPPL 135
+PI S H Q + + L+ + +PPT T V P+
Sbjct: 248 IPITSSDNHYQQDAHQNAPPLLDTNAPPTSTMVVPM 283
>AY064464-1|AAL40874.1| 882|Caenorhabditis elegans minibrain kinase
protein.
Length = 882
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 242 LPILSLIFHIYQTPNSRSSFLIPSTSPPTYTRVPPL 135
+PI S H Q + + L+ + +PPT T V P+
Sbjct: 248 IPITSSDNHYQQDAHQNAPPLLDTNAPPTSTMVVPM 283
>AC006723-4|AAK68423.1| 341|Caenorhabditis elegans Hypothetical
protein Y19D10B.1 protein.
Length = 341
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = -1
Query: 243 ATHSEFNFPYLSNSKLEIFLLDSLYEPTDVYASTSTAHDC 124
AT + FP NS ++ D YAST DC
Sbjct: 219 ATMQTYGFPQWQNSSYDVRSSDGKLLREKFYASTRPQQDC 258
>Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical
protein F55A11.3 protein.
Length = 610
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 198 LEIFLLDSLYEPTDVYASTSTAHDCMVCVYEVRLLY 91
L FL++ + P+ VY S S A ++ V + L+Y
Sbjct: 21 LNAFLINKQFYPSIVYLSKSNASMAVIYVQGIVLVY 56
>Z68004-3|CAA91983.2| 380|Caenorhabditis elegans Hypothetical
protein F47B10.3 protein.
Length = 380
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 219 PYLSNSKLEIFLLDSLYEPTDVYASTSTAHDCMVCVYEVRLLYN 88
P+L + +E+ S+Y T Y S HD +V L+N
Sbjct: 69 PFLVKTSVEVAYFISIYFYTSSYTFWSWIHDSVVSFCYSSFLFN 112
>Z81113-7|CAI79236.1| 351|Caenorhabditis elegans Hypothetical
protein T03F6.7 protein.
Length = 351
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 176 ESRRKISSLEFDKYGKLN 229
ES +K S FD+YGK N
Sbjct: 85 ESNQKSYSFRFDRYGKRN 102
>AY081955-1|AAL92523.1| 788|Caenorhabditis elegans MAT-1 protein.
Length = 788
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 220 SIFIKLQTRDLPS*FPLRAHRRIREYLH 137
S+ ++ Q R++ FP AHR I + +H
Sbjct: 7 SVAVRPQLREVFERFPADAHRTIEDEIH 34
>AC006708-14|AAT81172.1| 273|Caenorhabditis elegans
Metaphase-to-anaphase transitiondefect protein 1,
isoform b protein.
Length = 273
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 220 SIFIKLQTRDLPS*FPLRAHRRIREYLH 137
S+ ++ Q R++ FP AHR I + +H
Sbjct: 7 SVAVRPQLREVFERFPADAHRTIEDEIH 34
>AC006708-13|AAF60415.1| 788|Caenorhabditis elegans
Metaphase-to-anaphase transitiondefect protein 1,
isoform a protein.
Length = 788
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 220 SIFIKLQTRDLPS*FPLRAHRRIREYLH 137
S+ ++ Q R++ FP AHR I + +H
Sbjct: 7 SVAVRPQLREVFERFPADAHRTIEDEIH 34
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,895,824
Number of Sequences: 27780
Number of extensions: 80302
Number of successful extensions: 286
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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