Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G01
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   128   2e-31
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   128   2e-31
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    24   4.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   5.5  
SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    23   7.3  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    23   7.3  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    23   9.6  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    23   9.6  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  128 bits (309), Expect = 2e-31
 Identities = 58/91 (63%), Positives = 68/91 (74%)
 Frame = +2

Query: 26  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDF*G 205
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGND  G
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 206 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 298
           FPM QGVL   RVRLL+  GH CYRPRRDGE
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGE 91


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  128 bits (309), Expect = 2e-31
 Identities = 58/91 (63%), Positives = 68/91 (74%)
 Frame = +2

Query: 26  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDF*G 205
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGND  G
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 206 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 298
           FPM QGVL   RVRLL+  GH CYRPRRDGE
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGE 91


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 68  LFEVVDEHKLRIFYEKRMGAEVDADLLGDEW 160
           +FE V EH L   Y+K +  ++D  L+   W
Sbjct: 349 VFEYVLEHTLPHLYQKIIELDMDLKLITINW 379


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 287 DVVCSKSGLSTSRDVHGC 234
           D++C+   ++TS D+H C
Sbjct: 852 DILCNIKSIATSLDIHIC 869


>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 86  EHKLRIFYEKRMGAEVDADLLGDEWKG 166
           EHK + FYEK +G      +    W+G
Sbjct: 53  EHKGKPFYEKLVGFMASGPVCAMIWEG 79


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 176 GEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 27
           G ++ S+R L+ L+ +Q  Y          HP    TSD     M+  ++
Sbjct: 388 GVNSPSLRPLQSLNNVQNSYRVASTQAPPPHPLRNYTSDAESISMRSKST 437


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 62   QKLFEVVDEHKLRIFYE 112
            Q +FE+++ H  +IF+E
Sbjct: 1225 QTIFEMIESHLSKIFFE 1241


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 113 FHRRYGACAHPPLQITSDIPLPGMKRSTS*LRSV 12
           F+ R+GAC H   ++   I   GM      +R V
Sbjct: 520 FYSRWGACLHWSSKLKKGILCGGMNELNEPVREV 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,148,405
Number of Sequences: 5004
Number of extensions: 19723
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)