Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_G01
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 117 2e-27
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 114 1e-26
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 30 0.29
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 3.6
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 26 4.7
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 26 4.7
05_01_0576 - 5130589-5131995 26 4.7
10_01_0024 + 323362-323382,323554-323576,324228-324307,324605-32... 26 6.3
01_06_0403 - 29060712-29060732,29061260-29061334,29061596-290617... 26 6.3
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 117 bits (281), Expect = 2e-27
Identities = 54/93 (58%), Positives = 68/93 (73%), Gaps = 2/93 (2%)
Frame = +2
Query: 26 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDF*G 205
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG D G
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 206 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGE 298
FPMKQGVLT+ RVRLL+ +G C+R RRDGE
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGE 93
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 114 bits (274), Expect = 1e-26
Identities = 53/93 (56%), Positives = 67/93 (72%), Gaps = 2/93 (2%)
Frame = +2
Query: 26 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDF*G 205
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG D G
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 206 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGE 298
FPMKQGVLT RVRLL+ +G C+R RRDGE
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGE 93
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 30.3 bits (65), Expect = 0.29
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 115 LFIEDTELVLIHHFK*LLTSRCRV*NVQLHDCDQSLV 5
LF++ T V + F L RC V + +LH C Q+LV
Sbjct: 76 LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQNLV 112
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 62 QKLF-EVVDEHKLRIFYEKR 118
+KL+ E+ DE KLRI YEK+
Sbjct: 494 KKLYQEIKDEEKLRILYEKK 513
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 80 VDEHKLRIFYEKRMGAEVDADLLGDEWKGYVL 175
++ + +RIF + + E D++ EW GY+L
Sbjct: 139 IEYYYIRIFENQDVEIEEKVDVIISEWMGYML 170
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 62 QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 157
+KL+ EV +LRI YEKR+ + D+ GDE
Sbjct: 492 KKLYKEVKAGERLRIDYEKRLNHLRNQDVKGDE 524
>05_01_0576 - 5130589-5131995
Length = 468
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 113 KRMGAEVDADLLGDEWKGYVLRVAGGN 193
+R G E+DADLL DE + GGN
Sbjct: 405 ERSGGELDADLLHDELVDDGVVAGGGN 431
>10_01_0024 +
323362-323382,323554-323576,324228-324307,324605-324688,
324789-324793,324838-325284,325625-325981,326643-326711
Length = 361
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 203 PKSRYRRQHGEHNLSIRRLEDLHQLQRP 120
P+ + QHG HN S+R L + + +P
Sbjct: 103 PQEQQEEQHGYHNPSLRVLPFVGDINKP 130
>01_06_0403 -
29060712-29060732,29061260-29061334,29061596-29061762,
29061841-29061996,29062412-29062535,29062949-29063047,
29063155-29063254,29063331-29063380,29063461-29063562,
29063709-29063786,29063865-29064131,29064225-29064321,
29064446-29064746,29066714-29066805,29066890-29067005,
29067445-29067519,29067846-29067911,29068206-29068262,
29068381-29068430,29068518-29068688,29068969-29069060,
29069124-29069281
Length = 837
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 206 SPKSRYRRQHGEHNLSIRRLEDLHQLQRPYAFHR 105
S + + RR+ G+H SI + D+ +L+ FH+
Sbjct: 340 SLRRKRRRRVGDHVASIEDIRDVKELEAVQRFHQ 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,971,353
Number of Sequences: 37544
Number of extensions: 152468
Number of successful extensions: 397
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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