Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_G01
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   0.61 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   0.81 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   0.81 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   5.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   7.6  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.4 bits (48), Expect = 0.61
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 200 KSRYRRQHGEHNLSIRRLEDLHQLQRPYAFH 108
           KS Y RQH ++    + +E + + +R    H
Sbjct: 52  KSIYHRQHSKNEQQRKEMEQMREREREQREH 82


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 0.81
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 270 EWPFDIKRRTRLLVRTPCFI 211
           EWP  +++R  L +   CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 0.81
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 270 EWPFDIKRRTRLLVRTPCFI 211
           EWP  +++R  L +   CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 116 RMGAEVDADLLGDEWKGYV 172
           R+G  + +D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +1

Query: 31  VERFIPGNGM 60
           +E ++PGNG+
Sbjct: 416 IEEYLPGNGV 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,052
Number of Sequences: 438
Number of extensions: 1655
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)