Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F24
(481 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 274 7e-73
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 270 8e-72
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 213 3e-65
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 246 2e-64
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 218 6e-56
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 204 8e-52
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 202 4e-51
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 197 1e-49
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 126 2e-47
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 184 7e-46
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 172 3e-42
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 146 2e-34
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 113 1e-24
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 107 2e-22
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 105 7e-22
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 103 2e-21
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 100 1e-20
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 99 3e-20
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 99 6e-20
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 90 3e-17
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 90 3e-17
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 87 1e-16
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 87 2e-16
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 85 1e-15
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 84 2e-15
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 81 2e-14
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 79 4e-14
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 78 1e-13
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 78 1e-13
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 75 6e-13
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 71 2e-11
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 60 3e-08
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 56 3e-07
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 43 0.004
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.022
UniRef50_A5NNX2 Cluster: Putative uncharacterized protein; n=1; ... 35 0.82
UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family prote... 34 1.9
UniRef50_Q1NH40 Cluster: TonB-dependent receptor; n=1; Sphingomo... 33 3.3
UniRef50_A6FFM6 Cluster: Hydrolase, alpha/beta fold family; n=1;... 33 3.3
UniRef50_A0R135 Cluster: Putative uncharacterized protein; n=1; ... 33 3.3
UniRef50_UPI00006DD0EE Cluster: hypothetical protein Bmal2_03001... 33 4.4
UniRef50_Q03C76 Cluster: Predicted membrane protein; n=1; Lactob... 33 4.4
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 4.4
UniRef50_A6S3K5 Cluster: Putative uncharacterized protein; n=1; ... 32 5.8
UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6; Methanococcal... 32 5.8
UniRef50_Q95108 Cluster: Thioredoxin, mitochondrial precursor; n... 32 5.8
UniRef50_Q88TN6 Cluster: Integral membrane protein; n=1; Lactoba... 32 7.7
UniRef50_Q5CY38 Cluster: Putative uncharacterized protein; n=2; ... 32 7.7
UniRef50_Q0UQQ4 Cluster: Putative uncharacterized protein; n=1; ... 32 7.7
UniRef50_Q5SW25 Cluster: POM121-like protein 2; n=3; Murinae|Rep... 32 7.7
UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precurs... 32 7.7
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 274 bits (672), Expect = 7e-73
Identities = 123/153 (80%), Positives = 137/153 (89%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAK 380
V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EK E FRL+YDVKGRF IHRI+ EEAK
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120
Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPEPL 479
YKLCKV++ G K VP+LVTHDGRT+RYP+PL
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPL 153
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 270 bits (663), Expect = 8e-72
Identities = 121/153 (79%), Positives = 135/153 (88%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAK 380
V KI QR IK+DGKVRTD TYPAGFMDV+SI+K E FRLIYD KGRF +HRITPEEAK
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120
Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPEPL 479
YKLCKVR++ G K +P+LVTHD RT+RYP+PL
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPL 153
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 213 bits (520), Expect(2) = 3e-65
Identities = 98/119 (82%), Positives = 106/119 (89%)
Frame = +3
Query: 24 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 203
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 204 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAK 380
KI QR IK+DGKVRTD TYP GFMDV+SI+K E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 57.6 bits (133), Expect(2) = 3e-65
Identities = 21/34 (61%), Positives = 29/34 (85%)
Frame = +3
Query: 378 KYKLCKVRRVATGPKSVPYLVTHDGRTLRYPEPL 479
+YKLCKV+++ G K +P+LVTHD RT+RYP+PL
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPL 185
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 246 bits (603), Expect = 2e-64
Identities = 112/153 (73%), Positives = 128/153 (83%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI K NE FRL+YD KGRF +H I EEAK
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPEPL 479
+KLCKVR + G K +PYL T+DGRT+RYP+PL
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPL 153
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 218 bits (532), Expect = 6e-56
Identities = 94/152 (61%), Positives = 117/152 (76%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAK 380
V IVK R IK+DGK+RTD YP GFMDV+SI + E FRL+Y+ K RF + +T E+AK
Sbjct: 61 VTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAK 120
Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPEP 476
+KLCK+ + G ++PY+VTHDGRT+RYP P
Sbjct: 121 FKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHP 152
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 204 bits (498), Expect = 8e-52
Identities = 93/156 (59%), Positives = 116/156 (74%)
Frame = +3
Query: 9 VLFNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYAL 188
VLF M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYAL
Sbjct: 11 VLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYAL 70
Query: 189 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITP 368
T E + IVK+RL+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I
Sbjct: 71 TAKEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEA 130
Query: 369 EEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPEP 476
+EA +KL +V + G K +P++VTHDGRT+ Y +P
Sbjct: 131 KEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDP 166
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 202 bits (492), Expect = 4e-51
Identities = 97/153 (63%), Positives = 116/153 (75%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
+A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+E
Sbjct: 12 VAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDE 70
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAK 380
V KI Q IKVDGK+RTD P MDV+SI+K E F LIY + RF +HRITPEE K
Sbjct: 71 VKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVK 130
Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPEPL 479
YKLCK+R++ K +P+LV HD T+R+P+ L
Sbjct: 131 YKLCKMRKIFVRAKGIPHLVIHDIHTVRHPDSL 163
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 197 bits (480), Expect = 1e-49
Identities = 88/153 (57%), Positives = 116/153 (75%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAK 380
L I+K+ I VDGKVR D +PAG MDV+SI+ E +R++YD G F +HRIT +E+
Sbjct: 61 SLNILKKNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESM 120
Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPEPL 479
+KLCKV RV+ G K +PY+VTHDGRT+R+P L
Sbjct: 121 FKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLL 153
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 126 bits (303), Expect(2) = 2e-47
Identities = 57/75 (76%), Positives = 63/75 (84%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 201 VLKIVKQRLIKVDGK 245
V KI Q IK+DGK
Sbjct: 61 VKKIRMQHFIKMDGK 75
Score = 85.4 bits (202), Expect(2) = 2e-47
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = +3
Query: 330 DVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPEPL 479
D KGRF +HRITPEEAKYKL KVR++ G K +P+LVTHD RT+RYP+PL
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPL 125
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 184 bits (449), Expect = 7e-46
Identities = 87/147 (59%), Positives = 103/147 (70%)
Frame = +3
Query: 36 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 215
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 216 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCK 395
+Q L+ VD R D YPAGFMDVV I K + FRL+YDVKGRF + ++ EA+ KL K
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMK 122
Query: 396 VRRVATGPKSVPYLVTHDGRTLRYPEP 476
V + T VP VTHDG +RYP+P
Sbjct: 123 VVNLYTATGRVPVAVTHDGHRIRYPDP 149
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 172 bits (419), Expect = 3e-42
Identities = 92/186 (49%), Positives = 116/186 (62%), Gaps = 31/186 (16%)
Frame = +3
Query: 12 LFNMARGPKKHLKRLNAPKAWMLD-------------------------KLGGVY----A 104
++ ARGPKKHLKR+NAPK+WML+ KL +Y A
Sbjct: 79 IYKKARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQA 138
Query: 105 PRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGF 278
RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 139 TRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGL 198
Query: 279 MDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRT 458
MDVV IEK ++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RT
Sbjct: 199 MDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRT 258
Query: 459 LRYPEP 476
+R+P P
Sbjct: 259 IRFPNP 264
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 146 bits (354), Expect = 2e-34
Identities = 69/152 (45%), Positives = 101/152 (66%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAK 380
+ I+ ++ IKV+G+VRT+ +P G DVVSIEK E FR++Y+V +F +HRI+ EEA
Sbjct: 61 LSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEAS 120
Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPEP 476
Y+L KV + + +PY+V+ G ++R+ +P
Sbjct: 121 YRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDP 151
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 113 bits (273), Expect = 1e-24
Identities = 56/143 (39%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Frame = +3
Query: 30 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 206
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 207 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYK 386
KI+ + I VDG VR +P +P G MDVV I + + +R++ + R + I+ EEA+ K
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVK 126
Query: 387 LCKVRRVATGPKSVPYLVTHDGR 455
+C+++ + HDG+
Sbjct: 127 VCRIKNKTYVRGGNLQITMHDGK 149
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 107 bits (256), Expect = 2e-22
Identities = 54/143 (37%), Positives = 82/143 (57%)
Frame = +3
Query: 27 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 206
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 207 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYK 386
KI++ I +DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ K
Sbjct: 64 KIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVK 121
Query: 387 LCKVRRVATGPKSVPYLVTHDGR 455
LCK+ L HDGR
Sbjct: 122 LCKIVNKTVVKGGNIQLNLHDGR 144
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 105 bits (251), Expect = 7e-22
Identities = 54/145 (37%), Positives = 79/145 (54%)
Frame = +3
Query: 27 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 206
+G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEAR 65
Query: 207 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYK 386
+I+ R+I+VDG+V TD +P G MDV+ I + +R++ D + I PEEA YK
Sbjct: 66 RILASRVIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYK 125
Query: 387 LCKVRRVATGPKSVPYLVTHDGRTL 461
L ++RR T HDGR +
Sbjct: 126 LAQIRRKMTVKNGDLQFTLHDGRNV 150
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 103 bits (248), Expect = 2e-21
Identities = 57/141 (40%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Frame = +3
Query: 42 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 218
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 219 QRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKV 398
+ +KVDG VR D +P G MDV+ I E++R++ D + + I+ EEA KL +V
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRV 122
Query: 399 RRVATGPKSVPYLVTHDGRTL 461
L HDGR L
Sbjct: 123 EGKTMVKGGRIQLHFHDGRNL 143
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 100 bits (240), Expect = 1e-20
Identities = 50/144 (34%), Positives = 77/144 (53%)
Frame = +3
Query: 30 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 209
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 210 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKL 389
I+ + VDG+V D +P GFMD++ I K E++R++ D KGR +++I EE KL
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKL 122
Query: 390 CKVRRVATGPKSVPYLVTHDGRTL 461
CK+ +T + HDG+ +
Sbjct: 123 CKIVNKSTIKGGKIQVNLHDGKNV 146
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 99 bits (238), Expect = 3e-20
Identities = 50/140 (35%), Positives = 73/140 (52%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 401
+KVDGKVR D YP G MDV+ + NE +R+I D RI EA K+C++
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIE 122
Query: 402 RVATGPKSVPYLVTHDGRTL 461
L HDGR +
Sbjct: 123 DKTMVKAGKIQLNLHDGRNI 142
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 98.7 bits (235), Expect = 6e-20
Identities = 56/149 (37%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
Frame = +3
Query: 21 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 197
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 198 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLI-YDVKGRFTIHRITPEE 374
E K++ + +VDG VR D +P GFMDV+ + E FR++ Y VK F +H I EE
Sbjct: 61 EARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEE 119
Query: 375 AKYKLCKVRRVATGPKSVPYLVTHDGRTL 461
K ++ T L HDGR +
Sbjct: 120 GDLKPVRIENKTTVKGGHVQLNLHDGRNI 148
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 89.8 bits (213), Expect = 3e-17
Identities = 47/140 (33%), Positives = 72/140 (51%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 401
+ VDGKVR D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIV 122
Query: 402 RVATGPKSVPYLVTHDGRTL 461
L HDG T+
Sbjct: 123 NKTALRGGKIQLNLHDGTTM 142
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 89.8 bits (213), Expect = 3e-17
Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 2/143 (1%)
Frame = +3
Query: 36 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 212
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 213 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLC 392
+ + VDG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYG 125
Query: 393 K-VRRVATGPKSVPYLVTHDGRT 458
K +R+V+ + Y +T DGRT
Sbjct: 126 KIIRKVSVRGGKIQYTLT-DGRT 147
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 87.4 bits (207), Expect = 1e-16
Identities = 45/140 (32%), Positives = 73/140 (52%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 401
R + VDG++ TD G MDV+++ + FR I DV G+ I+ + A KLC+V
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTV--GEDSFRCILDVNGKLRYRSISDKAAASKLCRVM 122
Query: 402 RVATGPKSVPYLVTHDGRTL 461
+T + HDGR +
Sbjct: 123 GKSTITDGKTQIHLHDGRNI 142
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 87.0 bits (206), Expect = 2e-16
Identities = 52/140 (37%), Positives = 69/140 (49%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 401
+ VDGKVR D YP G MDVV I A+ R+I D T I+ E+AKYK ++
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIM 122
Query: 402 RVATGPKSVPYLVTHDGRTL 461
T V L DGR +
Sbjct: 123 NKTTLKSGVLQLNLEDGRNI 142
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 84.6 bits (200), Expect = 1e-15
Identities = 43/140 (30%), Positives = 70/140 (50%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 401
+ VDG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRIN 121
Query: 402 RVATGPKSVPYLVTHDGRTL 461
T L +DG +
Sbjct: 122 NKTTVKGGKIQLNLNDGTNI 141
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 83.8 bits (198), Expect = 2e-15
Identities = 46/125 (36%), Positives = 67/125 (53%)
Frame = +3
Query: 39 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 218
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILH 61
Query: 219 QRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKV 398
QR + V+G+ D G D+VSI K + +R+ DVKG I E AK +LCK+
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKI 121
Query: 399 RRVAT 413
R T
Sbjct: 122 RNKTT 126
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 80.6 bits (190), Expect = 2e-14
Identities = 42/148 (28%), Positives = 73/148 (49%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAK 380
K+VK + V+GK +P MD +S AN+ +R++ G+ T++ I E
Sbjct: 61 AQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKD 120
Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLR 464
K+CKV ++ ++T D R L+
Sbjct: 121 LKICKVIKIINASSKNKIIITDDLRELK 148
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 79.4 bits (187), Expect = 4e-14
Identities = 45/137 (32%), Positives = 70/137 (51%)
Frame = +3
Query: 48 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 227
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 228 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRV 407
+KVDGK + + GFMDV+ I E +R++Y+ +G + + T E A KL KVR
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSK 123
Query: 408 ATGPKSVPYLVTHDGRT 458
P + L THDGRT
Sbjct: 124 VIAPGNRIQLGTHDGRT 140
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 77.8 bits (183), Expect = 1e-13
Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
Frame = +3
Query: 48 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 227
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 228 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCK-VRR 404
+KVDG++ D +P GFMDV+SI+ + ++YD KG+ I + P KL K V++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKK 126
Query: 405 VATGPKSVPYLVTHDGRTL 461
G + L HDG+T+
Sbjct: 127 TIIGTGKI-QLGFHDGKTI 144
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 77.8 bits (183), Expect = 1e-13
Identities = 40/122 (32%), Positives = 66/122 (54%)
Frame = +3
Query: 48 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 227
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 228 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRV 407
+ ++G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANK 123
Query: 408 AT 413
T
Sbjct: 124 TT 125
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 75.4 bits (177), Expect = 6e-13
Identities = 35/119 (29%), Positives = 62/119 (52%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKV 398
+ VDG R D +P G MD+++I N +R++ D K R ++++ A KLC++
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRI 121
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 70.5 bits (165), Expect = 2e-11
Identities = 40/140 (28%), Positives = 66/140 (47%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 401
+ ++GK +D P G D+++ + E +R+ GR + I P+ A+ KL K+
Sbjct: 63 DNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIV 122
Query: 402 RVATGPKSVPYLVTHDGRTL 461
L HDG TL
Sbjct: 123 TKTHVSGGDVQLGLHDGETL 142
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 60.1 bits (139), Expect = 3e-08
Identities = 38/141 (26%), Positives = 60/141 (42%)
Frame = +3
Query: 39 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 218
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 219 QRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKV 398
++VDG RT + G MDVV + +++R++ +I E K+C+V
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRV 127
Query: 399 RRVATGPKSVPYLVTHDGRTL 461
+ + HDGR+L
Sbjct: 128 TSKTSISGGRTQIGFHDGRSL 148
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 56.4 bits (130), Expect = 3e-07
Identities = 40/138 (28%), Positives = 64/138 (46%)
Frame = +3
Query: 48 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 227
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 228 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRV 407
+ VDGKV + GFMD +++ N+ + + YD KG+ I E KL +V+
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTV-SGND-YLVSYDRKGKLVILPKPGETKGLKLLRVKGK 123
Query: 408 ATGPKSVPYLVTHDGRTL 461
+ HDG T+
Sbjct: 124 TYVKGGRIQISFHDGSTM 141
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 42.7 bits (96), Expect = 0.004
Identities = 27/63 (42%), Positives = 33/63 (52%)
Frame = -3
Query: 470 RVPERAPVVRHQVRHALGAGRDAPHLAQLVLGFFRCDTVDSEPSFHIIY*TE*LICFLNG 291
RV A VV+ RHAL APHLAQLVL F D V +E S ++ E I +G
Sbjct: 131 RVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIALFDG 190
Query: 290 YNV 282
+V
Sbjct: 191 DDV 193
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.3 bits (90), Expect = 0.022
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +3
Query: 114 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 293
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 294 IEKANELFRLIYDVKG 341
IE +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_A5NNX2 Cluster: Putative uncharacterized protein; n=1;
Methylobacterium sp. 4-46|Rep: Putative uncharacterized
protein - Methylobacterium sp. 4-46
Length = 105
Score = 35.1 bits (77), Expect = 0.82
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +2
Query: 395 GAARRDRPQERAVPGDARRAHAPVPGT 475
G RRDRPQER P RRA P+ G+
Sbjct: 70 GGDRRDRPQERLAPRSLRRAERPLTGS 96
>UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Hydrolase,
alpha/beta fold family protein - Plesiocystis pacifica
SIR-1
Length = 310
Score = 33.9 bits (74), Expect = 1.9
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +3
Query: 72 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 251
W +D LGG+ K+R LP+ +F ++ G V +V + ++ G R
Sbjct: 216 WWVDFLGGLIELGDDAKLRKIRADLPIYVFAGDQDPVGAQGKNVRALVDR--LRATGHAR 273
Query: 252 TDPT-YPAGFMDVVSIEKANELFRLIYDVKG 341
T YP G ++++ + +++ R + D G
Sbjct: 274 VKQTLYPGGRHEMINERERDQVTRELIDWLG 304
>UniRef50_Q1NH40 Cluster: TonB-dependent receptor; n=1; Sphingomonas
sp. SKA58|Rep: TonB-dependent receptor - Sphingomonas
sp. SKA58
Length = 810
Score = 33.1 bits (72), Expect = 3.3
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = -1
Query: 439 TRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFAFSMDTTSINPAGYV 260
T +G L P T + Y + S + VN T ++ F ++ D SIN GY+
Sbjct: 415 TDFGFNLAPANTNL---ATYKSESKALFAQVNYSLTERLRVTGGFRYTWDKRSINRMGYI 471
Query: 259 GSVRTFPSTLMR--RCFTILSTSL 194
G + F + + R T+ +T L
Sbjct: 472 GGIPGFSGSFVSNGRLITLPATGL 495
>UniRef50_A6FFM6 Cluster: Hydrolase, alpha/beta fold family; n=1;
Moritella sp. PE36|Rep: Hydrolase, alpha/beta fold
family - Moritella sp. PE36
Length = 301
Score = 33.1 bits (72), Expect = 3.3
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +3
Query: 60 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 239
+P+ W LD + G+ + K+ LP+ IF + L G VL + KQ ++
Sbjct: 206 SPQFW-LDFMSGLITISQKSEIAKIPNQLPIYIFSGEQDPVGLQGKGVLAL-KQHIVNSG 263
Query: 240 GKVRTDPTYPAGFMDVVSIEKANELFRLIYD 332
+ YP G ++++ ANE+F + D
Sbjct: 264 CEQVQYKLYPGGRHEMLNESNANEVFNDVTD 294
>UniRef50_A0R135 Cluster: Putative uncharacterized protein; n=1;
Mycobacterium smegmatis str. MC2 155|Rep: Putative
uncharacterized protein - Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155)
Length = 312
Score = 33.1 bits (72), Expect = 3.3
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Frame = +1
Query: 391 ARCGASRPAPRACRTW*RTTGAR-----SGTRNRS 480
+R G SRP+ CR W RTTG+R +G+ NRS
Sbjct: 3 SRAGCSRPSCCGCRPWIRTTGSRDRRPHAGSGNRS 37
>UniRef50_UPI00006DD0EE Cluster: hypothetical protein
Bmal2_03001706; n=1; Burkholderia mallei 2002721280|Rep:
hypothetical protein Bmal2_03001706 - Burkholderia
mallei 2002721280
Length = 356
Score = 32.7 bits (71), Expect = 4.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 465 TGACARRASPGTARSWGRSRRAAPCTACTW 376
TGA A+ A+P +RSW RSR + +C W
Sbjct: 307 TGAGAQHAAPSWSRSWSRSRSWSWSWSCGW 336
>UniRef50_Q03C76 Cluster: Predicted membrane protein; n=1;
Lactobacillus casei ATCC 334|Rep: Predicted membrane
protein - Lactobacillus casei (strain ATCC 334)
Length = 981
Score = 32.7 bits (71), Expect = 4.4
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 259 GSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSL 128
GS TFP L + + I+ LP+S + FR ITSG S ++
Sbjct: 891 GSGGTFPMELTNQFYNIIHPFLPMSYSIMNFRNAITSGIASNTV 934
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 4.4
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +3
Query: 75 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 236
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
>UniRef50_A6S3K5 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 571
Score = 32.3 bits (70), Expect = 5.8
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -1
Query: 340 PFTSYIKRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTS 197
P +K +NS S+DTTS NP+ Y S T T+ + +I STS
Sbjct: 301 PTYESVKSSNSGCKSLDTTSYNPSAYKISDATTCETINEKETSISSTS 348
>UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6;
Methanococcales|Rep: DNA topoisomerase 1 - Methanococcus
jannaschii
Length = 761
Score = 32.3 bits (70), Expect = 5.8
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +3
Query: 111 PSTGPHKLRECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 287
P T KL + + + N +K + + G +I+K+ L V+GK + DP +PA +
Sbjct: 316 PRTSSQKLPKDRKYLEDILNIIKNHPVYGKWAERILKENLKPVEGK-KEDPAHPAIHIVD 374
Query: 288 VSIEKANELFRLIYDVKGRFTI 353
+ E+ +E + IYD+ R T+
Sbjct: 375 IPKEELSEKEKEIYDLIARRTL 396
>UniRef50_Q95108 Cluster: Thioredoxin, mitochondrial precursor;
n=10; Euteleostomi|Rep: Thioredoxin, mitochondrial
precursor - Bos taurus (Bovine)
Length = 166
Score = 32.3 bits (70), Expect = 5.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -1
Query: 178 LSRFRRKITSGKHSRSLWGPVEGRGAYTP 92
L RF I SGK S+S W PV R TP
Sbjct: 7 LRRFLTSIISGKPSQSRWAPVASRALQTP 35
>UniRef50_Q88TN6 Cluster: Integral membrane protein; n=1;
Lactobacillus plantarum|Rep: Integral membrane protein -
Lactobacillus plantarum
Length = 1106
Score = 31.9 bits (69), Expect = 7.7
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = -1
Query: 259 GSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 80
GS TFP + + F + LP++ + FR+ +T G S W + T SL
Sbjct: 1019 GSGGTFPMEITNKFFNAIHPYLPLTYSIQAFRQALTGGWGSGIFWSSIVVLAGITIVSLG 1078
Query: 79 NIHALGAF 56
+ A F
Sbjct: 1079 LLWASMVF 1086
>UniRef50_Q5CY38 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 2901
Score = 31.9 bits (69), Expect = 7.7
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = -1
Query: 433 YGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFAFSMDTTS-INPAGYVG 257
+GT L + + LH L+ SS + + +I+ +N F +++ INP +
Sbjct: 735 FGTHLSNMLFKENLHELFPFSSDNSNKAKKVTSSFFIELSNQFRMNLEKNMYINPKNTID 794
Query: 256 SVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKI 155
S+ + S +R C L LP +S +K+
Sbjct: 795 SIESIYS--IRVCSAPLFAFLPFDITISPINKKL 826
>UniRef50_Q0UQQ4 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 790
Score = 31.9 bits (69), Expect = 7.7
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -1
Query: 388 SLYLASSGVIRWIVNLPFTSYIKRNNSFAFSMDT 287
+LYLA+S V+ W + P +Y ++N ++S DT
Sbjct: 171 TLYLATSPVVPWDRSFPTAAYSTQHNETSYSFDT 204
>UniRef50_Q5SW25 Cluster: POM121-like protein 2; n=3; Murinae|Rep:
POM121-like protein 2 - Mus musculus (Mouse)
Length = 972
Score = 31.9 bits (69), Expect = 7.7
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 277 NPAGYVGSV-RTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPV 116
NP +V R FP M+R + SLP + S +R I S +H R+ W PV
Sbjct: 66 NPTAFVSEAWRRFP---MKRPQNPIMGSLPSDWWESYLKRNIWSLRHPRATWSPV 117
>UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precursor;
n=17; Amniota|Rep: Uncharacterized protein CXorf36
precursor - Homo sapiens (Human)
Length = 182
Score = 31.9 bits (69), Expect = 7.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 261 TYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRV 407
+YPA + D I + E+FRL+ + + RI + K C + RV
Sbjct: 96 SYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERV 144
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 531,705,972
Number of Sequences: 1657284
Number of extensions: 11033407
Number of successful extensions: 37373
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 35940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37351
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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