Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F24
         (481 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   4.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   5.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.8  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   7.8  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   7.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.8  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 12  LFNMARGPKKHLKRLNAPKAWMLDKLG 92
           +  + R P +++K++N   A  LD+ G
Sbjct: 606 VIGIGRSPDQNVKKINLKHALDLDRQG 632


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLG 92
           + R P +++K++N   A  LD+ G
Sbjct: 609 IGRSPDQNVKKINLKHALDLDRRG 632


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +1

Query: 79  WTSWAACTRRGPR 117
           W +W  CTR   R
Sbjct: 190 WPAWVYCTRYSDR 202


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +3

Query: 186 LTGNEVLKIVKQRLIK 233
           L  N++LK++++ L+K
Sbjct: 392 LQQNKILKVIRKNLVK 407


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +1

Query: 358 VSHLKKPSTSCARCGASRPAPRACRTW 438
           V ++KK  T  A CG   P       W
Sbjct: 175 VDYMKKNKTLGAACGRIHPIGSGGMVW 201


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +1

Query: 358 VSHLKKPSTSCARCGASRPAPRACRTW 438
           V ++KK  T  A CG   P       W
Sbjct: 489 VDYMKKNKTLGAACGRIHPIGSGGMVW 515


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +1

Query: 358 VSHLKKPSTSCARCGASRPAPRACRTW 438
           V ++KK  T  A CG   P       W
Sbjct: 722 VDYMKKNKTLGAACGRIHPIGSGGMVW 748


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +1

Query: 358 VSHLKKPSTSCARCGASRPAPRACRTW 438
           V ++KK  T  A CG   P       W
Sbjct: 722 VDYMKKNKTLGAACGRIHPIGSGGMVW 748


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,812
Number of Sequences: 336
Number of extensions: 2468
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)