Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F24
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   260   1e-70
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   258   2e-70
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   258   3e-70
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   3.4  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    26   3.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   5.9  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   7.8  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  260 bits (636), Expect = 1e-70
 Identities = 114/153 (74%), Positives = 130/153 (84%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAK 380
           V  I+ QRLIKVDGKVRTD T+P GFMDV+S+EK  E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61  VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120

Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPEPL 479
           YKLCKV+RV  G K VP+LVTHDGRT+RYP+PL
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPL 153


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  258 bits (633), Expect = 2e-70
 Identities = 113/153 (73%), Positives = 130/153 (84%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAK 380
           V  I+ QRLIKVDGKVRTD T+P GFMDV+S++K  E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61  VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAK 120

Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPEPL 479
           YKLCKV+RV  G K VP+LVTHDGRT+RYP+PL
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPL 153


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  258 bits (632), Expect = 3e-70
 Identities = 113/153 (73%), Positives = 130/153 (84%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAK 380
           V  I+ QRLI+VDGKVRTD T+P GFMDV+S+EK  E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61  VKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120

Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPEPL 479
           YKLCKV+RV  G K VP+LVTHDGRT+RYP+PL
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPL 153


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -1

Query: 433 YGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFAFSMDTTSINPAGYVGS 254
           YGTLL        L  L   +   + +  +LP   ++    +F  ++  T+    G + S
Sbjct: 578 YGTLLMHFEPTYALSRLVSFAPPEVTF--SLPELDFLTSVFNFPLALRNTATRILGIILS 635

Query: 253 VR--TFPSTLMRRCFTILSTS 197
            +  T  S ++  CFTI+STS
Sbjct: 636 TKDSTRISEVLSSCFTIISTS 656


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
 Frame = +3

Query: 216 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCK 395
           K++  K+   +R +  +P    +  +I +    F  +    G +   +I     K  LC 
Sbjct: 13  KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72

Query: 396 VR-RVATGPKSVPYLVTHDGRTLRYPEPL 479
               V T PK+  Y+V   GR    P+ +
Sbjct: 73  NPIDVHTDPKNTEYIVASGGRRKIEPQDI 101


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 282  DVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYL-VTHDGRT 458
            +V S+EK N++F + Y+V  +     +   +   K+  ++ ++   K+VP + V H    
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777

Query: 459  LR 464
            L+
Sbjct: 1778 LK 1779


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 150 LVIFLRNRLKYALTGNEVLKIV 215
           L+ F+  RL++ LT  E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 178 LSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 80
           L R +R   +   + S+W  +E   A+  PSLS
Sbjct: 597 LLRLKRSNRTAAQTASVWNRIERAAAHDGPSLS 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,071,700
Number of Sequences: 5004
Number of extensions: 42087
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)