Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F24
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 237 4e-63
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 236 8e-63
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 235 1e-62
01_01_1101 + 8731427-8732938 29 1.5
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 29 2.0
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759 29 2.6
12_01_1046 - 10756062-10756326,10757618-10757782,10757901-107582... 28 3.4
04_04_0950 + 29609484-29611025 27 6.0
12_01_0337 - 2591689-2593839 27 7.9
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 7.9
02_05_1023 + 33580416-33580904 27 7.9
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 27 7.9
01_06_0766 - 31820168-31820509,31821898-31822110,31822330-318224... 27 7.9
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 237 bits (579), Expect = 4e-63
Identities = 107/152 (70%), Positives = 124/152 (81%)
Frame = +3
Query: 24 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 203
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 204 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKY 383
+ I+ QR + VDGKVRTD TYPAGFMDVVSI K E FRL+YD KGRF +H I E+AK+
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137
Query: 384 KLCKVRRVATGPKSVPYLVTHDGRTLRYPEPL 479
KLCKVR V G K +P+L T+DGRT+RYP+PL
Sbjct: 138 KLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPL 169
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 236 bits (577), Expect = 8e-63
Identities = 105/153 (68%), Positives = 125/153 (81%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI K E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPEPL 479
+KLCKVR V G K +PYL T+DGRT+RYP+PL
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPL 153
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 235 bits (575), Expect = 1e-62
Identities = 104/153 (67%), Positives = 125/153 (81%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI K E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPEPL 479
+KLCKVR V G K +PYL T+DGRT+RYP+P+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPI 153
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 206 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 72
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 252 TDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGP 419
T P + S E A + LIYD++G + + P++A L + V T P
Sbjct: 126 TAPEWTPNVQCYGSGEYARISYALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
Length = 428
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 389 VQGAARRDRPQERAVPGDARRAHAPVPG 472
++GA RR R E+A+P + AP PG
Sbjct: 4 LRGAKRRKRQPEKALPAAGQAMPAPAPG 31
>12_01_1046 -
10756062-10756326,10757618-10757782,10757901-10758206,
10758279-10758377,10760555-10760670,10760756-10760848,
10760946-10761107,10761784-10762170
Length = 530
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 477 AVPGTGACARRASPGTARSWGRSRRAAPCTAC 382
AV + A A ASP A WGRS A+ C
Sbjct: 48 AVSASSAGAGAASPSPAAGWGRSDAASSLERC 79
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 220 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 92
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 451 PSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYI 323
P C + Y +L P+A + LH+ + S I + LP S +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLL 141
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 238 TGKCGLTPRTRRDLWTLYPLRKQMSYSV*YMM*KEGSLSTVSHLKKPSTSCAR 396
+GK L R +RDL L RK S ++ + K L + K + SCA+
Sbjct: 2107 SGKSLLVERLKRDLENLKKSRKSASSTLRKALQKAAQLRLMEKEKNKTPSCAK 2159
>02_05_1023 + 33580416-33580904
Length = 162
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 468 GTGACARRASPGTARSWGRSRRAAPCTAC 382
G GA ARR + + R R A PC AC
Sbjct: 104 GAGAIARRRRTASGAAACRWRSAPPCGAC 132
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -1
Query: 130 LWGPVEGRGAYTPPSLSNIHALGAFKR 50
L G G G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>01_06_0766 -
31820168-31820509,31821898-31822110,31822330-31822473,
31822759-31822797,31822834-31822932,31823024-31823113
Length = 308
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 352 STVSHLKKPSTSCARCGASRPAPRACRTW*RTTGARSGTRNRS 480
+ ++H K ST CGA P PR R W T R GT ++S
Sbjct: 18 AAITHPSKFSTLVV-CGARGPRPRYPRVW--KTRKRIGTVSKS 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,905,154
Number of Sequences: 37544
Number of extensions: 319541
Number of successful extensions: 1094
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -