Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F24
(481 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 217 3e-57
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 29 1.3
M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical pr... 29 1.7
M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical pr... 29 1.7
AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical ... 29 1.7
Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical pr... 27 5.3
U53181-7|AAA93487.1| 472|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF022980-5|AAG24192.1| 328|Caenorhabditis elegans Serpentine re... 27 5.3
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ... 27 7.0
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport... 27 7.0
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 217 bits (530), Expect = 3e-57
Identities = 99/150 (66%), Positives = 117/150 (78%)
Frame = +3
Query: 27 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 206
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 207 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHRITPEEAKYK 386
KI+ QR+++VDGKVRT +P GFMDVV+IE+ NE FR++YD KGR+ +HRI EA +K
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121
Query: 387 LCKVRRVATGPKSVPYLVTHDGRTLRYPEP 476
LCKV+ V T K VP L T DGRT+RYP+P
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDP 151
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 339 GRFTIHRITPEEAKYKLCKVRRVATGPKSVP-----YLVTHDGRTLR-YP 470
G+ + R+T E Y+ CK+++ A K VP Y+V H R ++ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical
protein ZK370.3b protein.
Length = 921
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = -3
Query: 245 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 153
+P H ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597
>M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical
protein ZK370.3a protein.
Length = 927
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = -3
Query: 245 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 153
+P H ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597
>AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical
protein Y71A12B.6 protein.
Length = 316
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 334 TSYIKRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMR 224
T+ N F FS T S+NP GY+ V TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272
>Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical
protein T11F9.10 protein.
Length = 325
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 352 STVSHLK-KPSTSCARCGASRP 414
+TV HL +P TSCA C ++RP
Sbjct: 19 TTVLHLHIRPPTSCATCTSNRP 40
>U53181-7|AAA93487.1| 472|Caenorhabditis elegans Hypothetical
protein F36D4.4 protein.
Length = 472
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 328 YIKRNNSFAFSMDTTSINPAGYVGSV 251
YI+ N F+FSM TT++ G++G++
Sbjct: 10 YIELNCKFSFSMATTAVFLCGHLGAL 35
>AF022980-5|AAG24192.1| 328|Caenorhabditis elegans Serpentine
receptor, class j protein45 protein.
Length = 328
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -1
Query: 346 NLPFTSYIKRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRF 167
N YI+ + F +D+T N G + SV ++ +T TI +++ +++ S F
Sbjct: 156 NFELLQYIREDFQETFGLDSTEFNMVGALFSVGSYETTHRAWIATISWSAVSIASITSFF 215
>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
related protein 2 protein.
Length = 1272
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 299 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 204
L NVH R G+ PV FD T+ N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496
>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
PGP-2 protein.
Length = 1272
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 299 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 204
L NVH R G+ PV FD T+ N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,749,875
Number of Sequences: 27780
Number of extensions: 244123
Number of successful extensions: 743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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