Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F23
         (466 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   2.4  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   3.2  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   3.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   4.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.4  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 49  SHISLNPKPWHPTNPR 2
           +H  L P+P HP+ PR
Sbjct: 60  AHTVLIPQPLHPSVPR 75


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 355 TAAVWIYRRTPELALLLSSLQ 417
           T+ V  Y+R+ +L  LLS+L+
Sbjct: 123 TSMVMFYKRSNDLKTLLSNLE 143


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 355 TAAVWIYRRTPELALLLSSLQ 417
           T+ V  Y+R+ +L  LLS+L+
Sbjct: 79  TSMVMFYKRSNDLKTLLSNLE 99


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 232 APTNKLMMHAAVMEEDFN 285
           APT+ +MMH  V  +  N
Sbjct: 252 APTSSIMMHHLVNPQSLN 269


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 95  RSGIVLAVRSTAYQIFPYFP*SETVAP 15
           R G++    +++ Q+   F  SET AP
Sbjct: 21  RGGVISEGVASSLQVVALFQLSETTAP 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,206
Number of Sequences: 336
Number of extensions: 1678
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10721526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)