Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F23
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   1.1  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   3.3  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   4.3  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   5.7  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   5.7  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   7.5  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    24   9.9  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 163 TDPLDRRAHIPVVHSAILQSTAIAPTNKLMMHAAVME 273
           TD  D  AH   +HS+I  ST ++ +++   H ++ E
Sbjct: 207 TDLFDEHAHAAPMHSSISISTLLSDSDRYEPHVSLTE 243


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 187 HIPVVHSAILQSTAIAPTNKLMMH 258
           H+PVVH   + ST +  T  L+ H
Sbjct: 95  HVPVVHIVGMPSTKVQDTGALLHH 118


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 68  CVRPALSRILPRILSWT 118
           C++P L  ++P +L+W+
Sbjct: 901 CIKPLLPELIPNLLAWS 917


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 8    ICRVPRFRIKGNMGIFDRRCCVRPALSR-ILPRI 106
            IC+V RF  + N  ++  +C ++  L R I P++
Sbjct: 999  ICKVIRFPGENNADVYFNKCAIKEFLERDISPQL 1032


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 20  PRFRIKGNMGIFDRRCCVRPALSRILPR 103
           P+ R  G + IF R+C +     R+LP+
Sbjct: 192 PKGRADGELSIFARQCVLLSPCLRMLPK 219


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 76  ASTIPDLTQDTILDLRDLGCTRAGPTTEITD 168
           + T+P  T +TI  LR    TR  P T+  D
Sbjct: 146 SKTLPQSTNETIEKLRQFLQTRYQPATKFLD 176


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 22/91 (24%), Positives = 39/91 (42%)
 Frame = +1

Query: 154 TEITDPLDRRAHIPVVHSAILQSTAIAPTNKLMMHAAVMEEDFNLTA*TATASFCTRTPA 333
           T    PL    + P     +  +TAIAP+++   H +V     N +   ++ +  T  P 
Sbjct: 212 TSYPPPLCPATYCPSNPPQLAPATAIAPSSQSSQHKSV-----NYSVTPSSINNHTAVPL 266

Query: 334 RNTT*SPTAAVWIYRRTPELALLLSSLQRPS 426
                SPT AVW+    P      +++ +P+
Sbjct: 267 -----SPTLAVWLPMTQPTFQPPSANVYQPA 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,825
Number of Sequences: 5004
Number of extensions: 25307
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)