Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F23
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647     30   0.80 
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302...    29   2.4  
04_04_0195 - 23488490-23488891,23489016-23489243,23489348-234894...    28   4.3  
04_03_0368 + 15004949-15005659,15005789-15005848                       28   4.3  
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756...    27   7.4  

>10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647
          Length = 263

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 207 CDSSVYSYCSHKQAHDACCCYGGGFQFNCLN-SNCKFLYANSCQEHDMITNCCCVD 371
           C+  V+S+CS +     CC     ++   ++ S  KFL+       D   +CCC D
Sbjct: 213 CEDQVHSWCSIETGEIGCCVRCMSYEIYLVHPSTDKFLFG------DESLHCCCAD 262


>06_03_1404 -
           29928792-29929040,29929147-29929551,29930130-29930280,
           29930363-29930501,29930578-29930743,29930826-29931041,
           29931142-29931323,29931412-29931538,29931974-29932112,
           29932227-29932353,29932501-29932612,29932704-29932784,
           29933330-29933483,29933569-29933689,29934003-29934045,
           29934356-29934460
          Length = 838

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 217 QSTAIAPTNKLMMHAAVMEEDFNLTA*TATASFCTRTPARNTT*SPTAAV 366
           +S ++  T KL+   A+ME  FNL      AS   R+  ++   SP AAV
Sbjct: 756 ESESLKQTAKLVYQTALMESGFNLPDPKDFASSIYRSVQKSLDLSPDAAV 805


>04_04_0195 -
           23488490-23488891,23489016-23489243,23489348-23489481,
           23489685-23489899,23490049-23490142,23490293-23490526,
           23490643-23490736
          Length = 466

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 225 SYCSHKQAHDACCCYGGGF 281
           S C H   HDA C YGG +
Sbjct: 146 SNCYHTHGHDAPCKYGGSY 164


>04_03_0368 + 15004949-15005659,15005789-15005848
          Length = 256

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +1

Query: 286 LTA*TATASFCTRTPARNTT*SPTAAVWIYRRTPELAL 399
           L A  ATA   T T A +TT SPTA   + RR P  A+
Sbjct: 195 LPAADATADPATDTFATSTTSSPTAGRRLLRRRPMTAI 232


>06_03_1344 -
          29472139-29473292,29474478-29475386,29475504-29475618,
          29476017-29476218,29477177-29477296,29477431-29477582,
          29478177-29478461
          Length = 978

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 52 YSHISLNPKPWHP 14
          +SH  LN KPWHP
Sbjct: 33 WSHSYLNQKPWHP 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,894,158
Number of Sequences: 37544
Number of extensions: 188364
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)