Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F23
         (466 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB126080-1|BAD20207.1|  156|Homo sapiens keratin associated prot...    32   1.1  
AY597812-1|AAT09005.1|  238|Homo sapiens UHS KerB-like protein.        29   6.0  
AJ628246-1|CAF31638.1|  167|Homo sapiens keratin associated prot...    29   6.0  
AB126072-1|BAD20199.1|  238|Homo sapiens keratin associated prot...    29   6.0  
AB126076-1|BAD20203.1|  165|Homo sapiens keratin associated prot...    29   7.9  

>AB126080-1|BAD20207.1|  156|Homo sapiens keratin associated protein
           protein.
          Length = 156

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
 Frame = +3

Query: 207 CDSS-VYSYCSHKQAHDACCCYGGGFQFNCLNSNCKFLYANSCQEHDMITNCCC 365
           C SS   S+C        CCC     Q +C    C     +SC +      CCC
Sbjct: 92  CSSSGCGSFCCQSSCSKPCCCQSSCCQSSCCKPCC---CQSSCCQSSCFKPCCC 142


>AY597812-1|AAT09005.1|  238|Homo sapiens UHS KerB-like protein.
          Length = 238

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +3

Query: 231 CSHKQAHDACCCYGGGFQFNCLNSNCKFLYANSCQEHDMITNCCC 365
           CS       CCC  G     C +S CK      C +      CCC
Sbjct: 165 CSQSSCCKPCCCSSGCGSSCCQSSCCK----PCCSQSSCCKPCCC 205


>AJ628246-1|CAF31638.1|  167|Homo sapiens keratin associated protein
           5-9 protein.
          Length = 167

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +3

Query: 231 CSHKQAHDACCCYGGGFQFNCLNSNCKFLYANSCQEHDMITNCCC 365
           CS       CCC  G     C +S CK      C +      CCC
Sbjct: 94  CSQSSCCKPCCCSSGCGSSCCQSSCCK----PCCSQSSCCKPCCC 134


>AB126072-1|BAD20199.1|  238|Homo sapiens keratin associated protein
           protein.
          Length = 238

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +3

Query: 231 CSHKQAHDACCCYGGGFQFNCLNSNCKFLYANSCQEHDMITNCCC 365
           CS       CCC  G     C +S CK      C +      CCC
Sbjct: 165 CSQSSCCKPCCCSSGCGSSCCQSSCCK----PCCSQSSCCKPCCC 205


>AB126076-1|BAD20203.1|  165|Homo sapiens keratin associated protein
           protein.
          Length = 165

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = +3

Query: 231 CSHKQAHDACCCYGGGFQFNCLNSNCKFLYANSCQEHDMITNCCC 365
           CS    +  CCC  G     C +S CK      C +      CCC
Sbjct: 92  CSQCSCYKPCCCSSGCGSSCCQSSCCK----PCCCQSSCCKPCCC 132


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,797,563
Number of Sequences: 237096
Number of extensions: 983020
Number of successful extensions: 2675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2662
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3986009860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)