Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F23
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    30   0.71 
Z81055-5|CAB02894.1|  278|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AC084197-33|AAN63423.2|  352|Caenorhabditis elegans Him-three pa...    28   2.9  
U55365-9|AAA98574.1|  346|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    27   8.8  

>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 94  LTQDTILDLRDLGCTRAGPTTEITDPLDRRAHI 192
           L +D  L + D G +R+GP+T+ T      AHI
Sbjct: 177 LNEDCSLKIADFGMSRSGPSTKTTPNTSPNAHI 209


>Z81055-5|CAB02894.1|  278|Caenorhabditis elegans Hypothetical
           protein F01G10.6 protein.
          Length = 278

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 276 GFQFN--CLNSNCKFLYANSCQEHDMITN 356
           GFQ +  C N N  F   NSCQ HD+ITN
Sbjct: 207 GFQIDKTCSNVNI-FGVDNSCQTHDLITN 234


>AC084197-33|AAN63423.2|  352|Caenorhabditis elegans Him-three
           paralog protein 2 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 82  TIPDLTQDTILDLRDLGCTRAGPTTEITDPLDRRAHIPV 198
           T P L+QDT     D G     P   ITD L++    P+
Sbjct: 289 TDPGLSQDTTESANDQGGNVTSPVDNITDSLEKTQMSPI 327


>U55365-9|AAA98574.1|  346|Caenorhabditis elegans Hypothetical
           protein C12D5.9 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -2

Query: 264 SSMHHELVCGSNSCRLKNRRVDNRDVRPAVQGVRNFRSRARPGTAQVPEVQDSILGKIRD 85
           SS+H E++  S  C+    ++ N  V    + ++N  +  +P     P+V D +   ++ 
Sbjct: 192 SSLHDEMI--SKQCQPVLLKLGNGVVGSLDKLIKN-ANETKPAVENRPDVCDELQNCLQK 248

Query: 84  SAGRTQHRLSN 52
           S   TQH  +N
Sbjct: 249 SCFYTQHNQTN 259


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 19/95 (20%), Positives = 42/95 (44%)
 Frame = +1

Query: 73  TASTIPDLTQDTILDLRDLGCTRAGPTTEITDPLDRRAHIPVVHSAILQSTAIAPTNKLM 252
           T++T+P+ +  +++       T A PT+ IT      +   ++ S +  +T + PT+ + 
Sbjct: 219 TSTTVPESSTTSVVQ----STTTAEPTSTITSTTVPESSTSLLTSTLASTTTLIPTSTMS 274

Query: 253 MHAAVMEEDFNLTA*TATASFCTRTPARNTT*SPT 357
                 +    +T+  ++    T T    TT + T
Sbjct: 275 TITLTSDRTSTITSTGSSNPPSTSTVPSTTTSTTT 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,865,386
Number of Sequences: 27780
Number of extensions: 153446
Number of successful extensions: 578
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)