Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F22
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   186   2e-48
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   185   2e-48
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    29   0.39 
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   2.8  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    25   4.8  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   4.8  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    24   8.5  
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S...    24   8.5  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    24   8.5  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    24   8.5  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  186 bits (452), Expect = 2e-48
 Identities = 89/123 (72%), Positives = 98/123 (79%)
 Frame = +1

Query: 52  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 231
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 232 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 411
           KDPKRLFEGNA           DE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 412 ARI 420
           AR+
Sbjct: 125 ARV 127


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  185 bits (451), Expect = 2e-48
 Identities = 89/123 (72%), Positives = 98/123 (79%)
 Frame = +1

Query: 52  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 231
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 232 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 411
           KDPKRLFEGNA           DE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 412 ARI 420
           AR+
Sbjct: 125 ARV 127


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 28.7 bits (61), Expect = 0.39
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 264 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETIL 136
           SI F+ S RIL     Q T  LT  S     + HF ++  TIL
Sbjct: 18  SIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTIL 60


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = -3

Query: 366 KTALQEVLNLQTEHI-IQFHLFLIKHSDPNQTT**SIAFKQSLRILLLECQQFTGSLTDA 190
           KT++ E+ N    H+  +F   ++K  +  Q         QSL     E   FT SL   
Sbjct: 187 KTSILEICNEMYVHLRTRFECRVMKKKNRTQWINIDEHLSQSLHATDTETHTFTDSLVVL 246

Query: 189 SERVLDAPHFTLVAETILSDDLQLL 115
           +E V+D    T +++ +L  D + L
Sbjct: 247 NEVVIDRGPNTAMSDIMLYVDSKYL 271


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 364 DGAPRSPQSSNRAHNPVSSVSHQALRP 284
           DGA  S Q+   AHNP +SVS + +RP
Sbjct: 90  DGA--SSQNDAFAHNPSTSVSVELVRP 114


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 372 SGVQGWSCEVNPSCP 416
           +G++GWS EV+P+ P
Sbjct: 385 AGLKGWSTEVDPNFP 399


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +1

Query: 25  LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 183
           ++K VN      FS +    +R  + A +D   + + E   RN++   +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 387 SLEHLSLKTALQEVLNLQTEHIIQ 316
           SL+ L + T LQEV+ +  EH ++
Sbjct: 565 SLKSLQIGTILQEVMTMAREHHVR 588


>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
           Alg14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 28  AKMVNNRVPSVFSKTYVTPRRPFEK 102
           A +++N +PSV SK +  PR  + K
Sbjct: 80  ASLLSNSLPSVKSKIFKVPRARYVK 104


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 25  LAKMV--NNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRN 153
           LAKM+  ++++P+    T        +KA +D+ L+   EYG+RN
Sbjct: 66  LAKMLEQHHKIPACLHLTCTN----VDKAIIDKALETAKEYGIRN 106


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 394 QDQP*TPESEDGAPRSPQSSN 332
           + QP TP S  GA   P+S N
Sbjct: 61  RSQPLTPSSSKGAGNEPKSQN 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,627,146
Number of Sequences: 5004
Number of extensions: 29766
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)