Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F22
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 158 1e-39
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 158 1e-39
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 157 3e-39
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 118 2e-27
07_03_1358 - 25984897-25984997,25985623-25985650 47 7e-06
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 2.0
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 2.7
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 4.7
10_01_0251 + 2641320-2643272 27 6.2
03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822... 27 8.2
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 27 8.2
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 158 bits (384), Expect = 1e-39
Identities = 74/120 (61%), Positives = 91/120 (75%)
Frame = +1
Query: 61 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 240
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 241 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 420
+R+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 70 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 129
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 158 bits (384), Expect = 1e-39
Identities = 74/120 (61%), Positives = 91/120 (75%)
Frame = +1
Query: 61 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 240
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 241 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 420
+R+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 286 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 345
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 157 bits (381), Expect = 3e-39
Identities = 74/118 (62%), Positives = 90/118 (76%)
Frame = +1
Query: 67 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 246
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 247 LFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 420
+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 95 IFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 152
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 118 bits (284), Expect = 2e-27
Identities = 62/120 (51%), Positives = 77/120 (64%)
Frame = +1
Query: 61 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 240
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 241 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 420
+R+FEG A E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 7e-06
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1
Query: 61 FSKTYVTPRRPFEKARLDQELKIIGEYG 144
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 340 IEDFLERRLQTQVFKAGLAKSIHHAR 417
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 115 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 237
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.5 bits (58), Expect = 4.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 94 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR----ELLTLE 228
FE A+ ++ KII E R+ ++ +KY LA A ELL L+
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQ 442
>10_01_0251 + 2641320-2643272
Length = 650
Score = 27.1 bits (57), Expect = 6.2
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = -3
Query: 228 LECQQFTGSLTDASERVLDAPHFTLVAETILSDDLQLLIKT-RLLERTSRSYVCFGKYRW 52
LE ++ TG+ + R++ FT+V IL D+ Q+ +KT + ER GK+R
Sbjct: 365 LEIKKITGNYS----RIIGKDMFTVVYSGILEDNTQVAVKTHNMFER--------GKWRC 412
Query: 51 YPVVHHLGELV 19
++ L EL+
Sbjct: 413 ANELNSLSELI 423
>03_06_0345 -
33281126-33281783,33281872-33282063,33282175-33282217,
33282751-33282874,33282966-33283058,33284484-33284685,
33284751-33284857,33285462-33285543,33285629-33285666,
33285751-33285837,33286324-33286434,33286554-33286904
Length = 695
Score = 26.6 bits (56), Expect = 8.2
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +1
Query: 31 KMVNNRVPSVFS----KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIR 198
K+ NN +P + K + ++ E LD L + G +R++RE RV YT
Sbjct: 343 KLKNNYLPEMEKIHKKKERLLKKQQREALLLDNRLTVNGFTSVRSRRERKRVTYTFDDYE 402
Query: 199 KAARELLTLEEK 234
++ E + +K
Sbjct: 403 RSINEAIKPTKK 414
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 379 TPESEDGAPRSPQSSNRAHNPVSSVSHQALRP 284
+P + P + S ++PV S SHQ+L P
Sbjct: 577 SPNKKTDTPPAVSSQAELNSPVESTSHQSLPP 608
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,998,130
Number of Sequences: 37544
Number of extensions: 210866
Number of successful extensions: 571
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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