Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F21
         (242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   1.4  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    23   4.3  
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    23   4.3  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    23   5.6  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    22   9.9  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    22   9.9  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        22   9.9  

>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 35  LRSRRVAWRVSVFYLGFTYRHNCV 106
           ++ R + W+   F++GF YR   V
Sbjct: 244 IKGRYIEWQNFCFHIGFNYREGIV 267


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 242 TPHKLYPSGRP 210
           T HKLYPSG P
Sbjct: 197 TLHKLYPSGLP 207


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 132 ELKENDCLILLDYGL 176
           E+K N+CL +LD G+
Sbjct: 50  EIKNNECLDMLDSGI 64


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 82  AKVEDRHTPRDATRPQQHALRPQ 14
           A VE+      AT PQQ  + PQ
Sbjct: 333 AGVEEGQVVESATAPQQEKINPQ 355


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 159 LLDYGLGLESVL*LRYVRSTTGVQLV 236
           LLD   GLESVL  +Y  S   +QLV
Sbjct: 92  LLDTA-GLESVLVQKYQSSYPAIQLV 116


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 207 RNVTTEPTLNLIHNLVISNSHFLLVLFFSSVCYLT 103
           RNV +  TL   H +     HF L +  +  C LT
Sbjct: 452 RNVRSLFTLPFFHTIRNIERHFRLFIRLALFCVLT 486


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 180 NLIHNLVISNSHFLLVLFFSSVCYL 106
           N +   V   + F L +FF S+C +
Sbjct: 148 NKLAKYVYEGNQFFLFIFFLSICQI 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 813,274
Number of Sequences: 5004
Number of extensions: 10805
Number of successful extensions: 27
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)