Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F21
         (242 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm rece...    27   1.8  
Z37092-1|CAA85452.1|  183|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z48009-8|CAA88081.1|  329|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    25   9.4  

>AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 221 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 192 EPTLNLIHNLVISNSHFLLVLFFSSVCY 109
           +P++ L  N++  N  F  +LFF   CY
Sbjct: 202 KPSIGLALNIMTMNISFFAILFFGLKCY 229


>Z37092-1|CAA85452.1|  183|Caenorhabditis elegans Hypothetical
           protein F44F4.1 protein.
          Length = 183

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 150 SHFLLVLFFSSVCYLTQL 97
           SHFL  LFF + CY   L
Sbjct: 8   SHFLFFLFFCAYCYFQML 25


>Z48009-8|CAA88081.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.11 protein.
          Length = 329

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 177 LIHNLVISNSHFLLVLF 127
           L HNLV +N H LL LF
Sbjct: 59  LFHNLVSANLHQLLYLF 75


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 3    TRLS*GLSACCCGRVASRGVCLSSTLALP 89
            T +  GLS CCC    S   CL  T++ P
Sbjct: 1653 TTIENGLSGCCC----STDACLDPTVSPP 1677


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 3    TRLS*GLSACCCGRVASRGVCLSSTLALP 89
            T +  GLS CCC    S   CL  T++ P
Sbjct: 1653 TTIENGLSGCCC----STDACLDPTVSPP 1677


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,510,012
Number of Sequences: 27780
Number of extensions: 61108
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)