Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F20
(380 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 158 1e-39
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr... 31 0.21
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ... 29 0.85
Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr... 28 2.0
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ... 28 2.0
AC006762-6|ABJ99063.1| 547|Caenorhabditis elegans Hypothetical ... 27 4.5
AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical ... 27 4.5
Z81508-5|CAB04138.1| 357|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z72512-1|CAA96663.2| 326|Caenorhabditis elegans Hypothetical pr... 27 6.0
AL132943-5|CAB81977.1| 367|Caenorhabditis elegans Hypothetical ... 27 6.0
Z81537-11|CAB04377.2| 329|Caenorhabditis elegans Hypothetical p... 26 7.9
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 26 7.9
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 26 7.9
Z47811-4|CAD57701.1| 422|Caenorhabditis elegans Hypothetical pr... 26 7.9
U80931-7|AAB38003.2| 526|Caenorhabditis elegans Organic anion t... 26 7.9
AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical ... 26 7.9
AF152095-1|AAF73198.1| 526|Caenorhabditis elegans multispecific... 26 7.9
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 26 7.9
>AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 19 protein.
Length = 198
Score = 158 bits (384), Expect = 1e-39
Identities = 69/118 (58%), Positives = 91/118 (77%)
Frame = +1
Query: 25 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 204
MS+L+LQKRLA++V++CGK +VWLDPNE++EI+ NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60
Query: 205 ARVRKNTEARRKGRHCGFGKRRGTANARMPQRELWXXXXXXXXXXXXXXXTAKKIDRH 378
R R+ EARRKGRH G+GKRRGTANARMP++ LW AKK+D+H
Sbjct: 61 FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKH 118
>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
ZC373.4 protein.
Length = 1211
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 121 ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 255
++T+S +N+R ++ D +K V H R ++E R+K R G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099
>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
protein F52G3.1 protein.
Length = 1172
Score = 29.5 bits (63), Expect = 0.85
Identities = 17/79 (21%), Positives = 34/79 (43%)
Frame = -3
Query: 324 PLPLNP*FPLWHSSISCTSPLTKATVTSFPARLCVFANTSAGMDSNWFLDDQTILDHLTD 145
P P N P W + + + FP+ L AN S ++ W + ++ + LTD
Sbjct: 114 PQPANDLRPSWLVAANAEQQANNSQAREFPS-LAPPANDSDKSNNKWDITSSSLAEKLTD 172
Query: 144 VLSGISISDFIDLVWIKPH 88
+ +G + + ++ P+
Sbjct: 173 MPNGEQFEGGVPIRFLGPN 191
>Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical
protein ZK1058.5 protein.
Length = 269
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 133 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 246
S +N+RKMIK G V+ + ++ A +R EAR R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208
>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical protein
ZK512.3 protein.
Length = 1418
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 234 ARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGISISD 118
A+ V ++ + + W L++ + +HLT +L I ISD
Sbjct: 1282 AKCQVLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISD 1320
>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
homologous cationchannel protein protein.
Length = 1027
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 234 ARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGISISD 118
A+ V ++ + + W L++ + +HLT +L I ISD
Sbjct: 891 AKCQVLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISD 929
>AC006762-6|ABJ99063.1| 547|Caenorhabditis elegans Hypothetical
protein Y42G9A.6b protein.
Length = 547
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 245 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVLAI 117
RP AS F + RA W A+ ++ P+L+ ++ F +++AI
Sbjct: 262 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF-QSIIIAI 303
>AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical
protein Y42G9A.6a protein.
Length = 684
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 245 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVLAI 117
RP AS F + RA W A+ ++ P+L+ ++ F +++AI
Sbjct: 399 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF-QSIIIAI 440
>Z81508-5|CAB04138.1| 357|Caenorhabditis elegans Hypothetical
protein F20E11.7 protein.
Length = 357
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 49 RLAASVMRCGKKKVWLDPNEI 111
++A + + CG K+W DPN I
Sbjct: 171 QIAETSVTCGDDKIWQDPNGI 191
>Z72512-1|CAA96663.2| 326|Caenorhabditis elegans Hypothetical
protein R07B5.3 protein.
Length = 326
Score = 26.6 bits (56), Expect = 6.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 179 LMTRPSLIILRMFCLELVLAISLISFGSSHTFFLPHRITEAASLFCNFRELIL 21
L+ PS IL FC L A S++ + +F + LFC+ R LIL
Sbjct: 86 LVRIPSTTILTYFCATLDPAESIVPLLVAVYYFSNYSSQLYTVLFCSTRTLIL 138
>AL132943-5|CAB81977.1| 367|Caenorhabditis elegans Hypothetical
protein Y116F11B.8 protein.
Length = 367
Score = 26.6 bits (56), Expect = 6.0
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -3
Query: 333 TEHPLPLNP*FPLWHSSISCTSPLTKATVTSFPARLCVFANTSAGMDSNWFLDDQT 166
TE L P W+S + + T ATVTS F++ +DS+ D T
Sbjct: 238 TEPASTLGPVVIPWNSPGTSSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPST 293
>Z81537-11|CAB04377.2| 329|Caenorhabditis elegans Hypothetical
protein F41D3.6 protein.
Length = 329
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 204 AGMDSNWFLDDQTILDHLTDVLSGISISDFIDLVWIKPHL 85
AG DSN+ + + +DHL + G+ D W+K H+
Sbjct: 204 AGTDSNYTI---SAIDHLRSLYHGVIFIMSNDPKWVKVHI 240
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 145 IRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMP 294
I K++KD V+K +A+ R R + GK++G A +R P
Sbjct: 108 INKILKD-FVVKSRIALGYRVLFRPGWDCHGLPIELKIGKQQGNAGSRTP 156
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 266 GEVQLMLECHKGNYGFKGKGCSVSCCL 346
GE+ + L C G Y ++GK S CL
Sbjct: 1006 GELAMDLVCTNGEYVYEGKQISTVSCL 1032
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 266 GEVQLMLECHKGNYGFKGKGCSVSCCL 346
GE+ + L C G Y ++GK S CL
Sbjct: 1006 GELAMDLVCTNGEYVYEGKQISTVSCL 1032
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 266 GEVQLMLECHKGNYGFKGKGCSVSCCL 346
GE+ + L C G Y ++GK S CL
Sbjct: 1006 GELAMDLVCTNGEYVYEGKQISTVSCL 1032
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 266 GEVQLMLECHKGNYGFKGKGCSVSCCL 346
GE+ + L C G Y ++GK S CL
Sbjct: 1006 GELAMDLVCTNGEYVYEGKQISTVSCL 1032
>Z47811-4|CAD57701.1| 422|Caenorhabditis elegans Hypothetical
protein K02C4.5 protein.
Length = 422
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Frame = +1
Query: 121 ANTNSRQNIR-KMIKDGLVIKKPV------AVHSRARVRKNTEARRKGR 246
A +R ++R KM DG VI+KP ++HS K++E GR
Sbjct: 91 AMRETRSSLRTKMAVDGTVIEKPKRRHFFNSIHSHLNSTKHSETENSGR 139
>U80931-7|AAB38003.2| 526|Caenorhabditis elegans Organic anion
transporter protein 1 protein.
Length = 526
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 216 ANTSAGMDSNWFLD--DQTILDHLTDVLSGISISDFIDLVW 100
++TS+ D N+ D DQ +L+ LT S+ D ++L W
Sbjct: 5 SSTSSEEDENFIKDVEDQKVLEVLTSHSKFKSLDDLVELRW 45
>AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical
protein Y68A4A.5 protein.
Length = 572
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 43 QKRLAASVMRCGKKKVWLDPNEI 111
Q ++A + + CG +W DPN I
Sbjct: 321 QAQIAETSVTCGSDAIWQDPNGI 343
>AF152095-1|AAF73198.1| 526|Caenorhabditis elegans multispecific
organic anion transporterprotein.
Length = 526
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 216 ANTSAGMDSNWFLD--DQTILDHLTDVLSGISISDFIDLVW 100
++TS+ D N+ D DQ +L+ LT S+ D ++L W
Sbjct: 5 SSTSSEEDENFIKDVEDQKVLEVLTSHSKFKSLDDLVELRW 45
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 145 IRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMP 294
I K++KD V+K +A+ R R + GK++G A +R P
Sbjct: 108 INKILKD-FVVKSRIALGYRVLFRPGWDCHGLPIELKIGKQQGNAGSRTP 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,548,069
Number of Sequences: 27780
Number of extensions: 160050
Number of successful extensions: 510
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -