Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F20
         (380 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   3.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   4.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   4.9  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   6.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   8.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   8.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   8.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   8.5  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 21  QDEFPKVTEEACSLC 65
           +DEF +  +  CSLC
Sbjct: 263 EDEFDEFGDSKCSLC 277


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 143 FCLELVLAISLISFGSSHTFFLPHRITEAASL 48
           + + L+L   LISF     F+LP    E  +L
Sbjct: 236 YTVNLILPTVLISFLCVLVFYLPAEAGEKVTL 267


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 203 ALVFAKTQRRAGKDVTVALVRGEVQLMLECHKG 301
           A++  K+ +   K V +A   GE++L L  H+G
Sbjct: 233 AVIQTKSLKLGTKQVLMA--SGELELTLRIHRG 263


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 284 LECHKGNYGFKGKGCSVSC 340
           L  H G+  FK + CS SC
Sbjct: 8   LRNHFGSKPFKCEKCSYSC 26


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -1

Query: 200 EWTATGFLMTRPSLIILRMFCLELVLAISL 111
           +W     ++ R  LII  +F +   +A+ L
Sbjct: 518 DWKFAAMVIDRMCLIIFTLFTIIATIAVLL 547


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 312 NP*FPLWHSSISCTSPLT 259
           NP +PL +S   CT  +T
Sbjct: 58  NPRYPLPYSGSKCTWTIT 75


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 334 YGAPFAFEPIVP 299
           YG PFA  PI P
Sbjct: 63  YGIPFAKPPIGP 74


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 334 YGAPFAFEPIVP 299
           YG PFA  PI P
Sbjct: 63  YGIPFAKPPIGP 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,058
Number of Sequences: 438
Number of extensions: 1878
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)