Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F19
         (333 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q550J2 Cluster: Putative uncharacterized protein; n=4; ...    33   0.96 
UniRef50_A1D8Y9 Cluster: Putative uncharacterized protein; n=2; ...    31   3.9  
UniRef50_UPI0000D9D643 Cluster: PREDICTED: similar to Rho guanin...    31   5.1  
UniRef50_UPI000150A287 Cluster: hypothetical protein TTHERM_0026...    31   6.7  

>UniRef50_Q550J2 Cluster: Putative uncharacterized protein; n=4;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 634

 Score = 33.5 bits (73), Expect = 0.96
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 218 RPEGSVTNVIGECSCGRTKLSGKGAMMASIFINCV 114
           +P G+   V GEC C  ++ +GKG  ++ I+IN V
Sbjct: 183 QPHGTCNRVTGECECD-SQTNGKGCELSRIYINSV 216


>UniRef50_A1D8Y9 Cluster: Putative uncharacterized protein; n=2;
           Trichocomaceae|Rep: Putative uncharacterized protein -
           Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
           181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
           3700 / NRRL 181))
          Length = 250

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = -2

Query: 323 LNIVHQ*VVRWPKPTTTPSDSHSLLM*CKLTGASFRPEGSVTNVIGECSCGRTKLSGKGA 144
           L I +Q  +  P PT T S +HS +    +T AS   E S T+   + S   +  +  G 
Sbjct: 93  LGIKYQTAISTPNPTATTSTTHSPVSQQSITAASTSTEASQTSPRAQASVHPSSSTSTGL 152

Query: 143 MMASIFINCVKAHAGV 96
            +++     +   AGV
Sbjct: 153 FLSTAAKAGIGVGAGV 168


>UniRef50_UPI0000D9D643 Cluster: PREDICTED: similar to Rho guanine
           nucleotide exchange factor 4 isoform a; n=4;
           Catarrhini|Rep: PREDICTED: similar to Rho guanine
           nucleotide exchange factor 4 isoform a - Macaca mulatta
          Length = 1002

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = +1

Query: 103 ACAFTQLIKMLAIMAPLPDSFVLPQLHSPITFVTDPSGLKLAPVSLHHINNECESLGVVV 282
           AC  ++L+K+ A   P P  +   Q  SP +   +P G +LAP +      +    G+ V
Sbjct: 110 ACLTSELVKLSAEEVPEPAEYKSEQ--SPESRTQEPQGTQLAPRAAAERQTQKHLWGISV 167

Query: 283 GFGQRTTHW 309
             G +T+++
Sbjct: 168 EAGNQTSNF 176


>UniRef50_UPI000150A287 Cluster: hypothetical protein TTHERM_00267920;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00267920 - Tetrahymena thermophila SB210
          Length = 2074

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 183  LTNYICNRSLWSETRTCEFTSHQQ*VRVTGSCRWLRPADYSLVNNV*SC 329
            +  Y  N+S +S   TC++ +++     TG+C+ + P  Y   NN+ SC
Sbjct: 929  MDGYTYNQSNYSCQSTCQYNTYRD--DTTGTCQSVCPTSYYNNNNLYSC 975


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 335,170,126
Number of Sequences: 1657284
Number of extensions: 6304828
Number of successful extensions: 14476
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14475
length of database: 575,637,011
effective HSP length: 86
effective length of database: 433,110,587
effective search space used: 10394654088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)