Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F19
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy...    25   2.3  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   4.0  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   4.0  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    24   7.0  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    23   9.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    23   9.2  

>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 206 SVTNVIGECSCGRTKLS 156
           S+T V GE  CG+T++S
Sbjct: 114 SITEVFGEFRCGKTQMS 130


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +3

Query: 108 CFHAINKNACHHGALTGQFCPATTTLTNYICNRSLWSE 221
           CF     N      L+G+F      L   +  R LW+E
Sbjct: 615 CFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLWNE 652


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 211 SGLKLAPVSLHHINNECESLGVVVGF 288
           S + L+ +S HH+NNE        GF
Sbjct: 592 SSIDLSTLSNHHVNNEINRRSFAGGF 617


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 177 TTLTNYICNRSLWSETRTCE 236
           TTL++Y+ +R+L++    CE
Sbjct: 759 TTLSDYLLSRNLYTNLTICE 778


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 85  PNVCTPACAFTQLIKMLAIMAPLPDSF 165
           P++  P  AFT  I +L  +A L D F
Sbjct: 138 PDMYIPLMAFTTHILLLCALAGLQDDF 164


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +2

Query: 53  YHCDLRWVSSNQTFAHPRVL 112
           Y C + W  S   F  PR++
Sbjct: 722 YLCSIYWAGSRLCFVQPRII 741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,378,830
Number of Sequences: 5004
Number of extensions: 26267
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)