Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F19
         (333 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0491 + 4290881-4291228,4291298-4291393                           27   3.7  
01_02_0110 + 11210174-11210292,11211635-11211752,11212426-112125...    27   3.7  
07_03_1465 - 26729872-26730909                                         26   6.4  
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117...    26   6.4  
04_01_0609 + 7966263-7966366,7967945-7968706,7972607-7972851,797...    26   8.5  
02_04_0256 + 21331396-21332268                                         26   8.5  

>08_01_0491 + 4290881-4291228,4291298-4291393
          Length = 147

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 172 PQLHSPITFVTDPSGLKLAPVSLHHINNECE--SLGVVVGF 288
           P+ H     VTD +    A  + HH+ +E +  S  VV GF
Sbjct: 78  PRPHGATAAVTDTTSAAAAAAAAHHLQHEADGGSKHVVTGF 118


>01_02_0110 +
           11210174-11210292,11211635-11211752,11212426-11212522,
           11212991-11213080,11213174-11213280,11213765-11213887,
           11214055-11214208,11214582-11214642,11214748-11215103,
           11216535-11218056,11218169-11218415
          Length = 997

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 130 MLAIMAPLPDSFVLPQLHSPITFVTDPSGLKLAP--VSLHHINNECESLGVVVGFGQR 297
           ++  M PLP S VLP    PI F   PS   + P    + +   +C  L  V   GQR
Sbjct: 592 IIVSMVPLPSSSVLPGSSGPIHF-GPPSYSSMTPWMKLVLYTAGDCGPLSAVFMKGQR 648


>07_03_1465 - 26729872-26730909
          Length = 345

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 320 NIVHQ*VVRWPKPTTTPSDS 261
           NIVH    RW   TT+PS S
Sbjct: 184 NIVHHVAQRWAASTTSPSSS 203


>05_05_0202 -
           23211342-23211385,23211493-23211579,23211666-23211779,
           23211886-23212111,23212222-23212401,23212511-23212654,
           23212818-23212979,23213093-23213296,23214109-23214156,
           23214601-23214846
          Length = 484

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 190 ITFVTDPSGLKLAPVSLHHINNECESLGVVVGFG 291
           +  VTD      A V + H+ N  + +GV+VG G
Sbjct: 417 VELVTDRQKKTPAKVEIGHVMNHMKDMGVLVGKG 450


>04_01_0609 +
           7966263-7966366,7967945-7968706,7972607-7972851,
           7976940-7977107,7977471-7977734,7977962-7978509
          Length = 696

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -2

Query: 230 GASFRPEGSVTNVIGECSCGRTKLSGKGAMMASIFINCVKAHAG 99
           G + RPE +  +  G C    +K +   + +   F NC + + G
Sbjct: 318 GPACRPETNYDSPFGACHSNHSKCANVTSGLDGYFCNCSEGYIG 361


>02_04_0256 + 21331396-21332268
          Length = 290

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 215 PEGSVTNVIGECSCGRTKLSGKGAMMASI 129
           P  SVT + GE + G+T+L  + A++A +
Sbjct: 59  PPASVTEIAGESASGKTQLCLQLALLAPL 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,138,548
Number of Sequences: 37544
Number of extensions: 178678
Number of successful extensions: 437
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)