Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F19
(333 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81532-5|CAE17816.1| 101|Caenorhabditis elegans Hypothetical pr... 27 2.5
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ... 27 4.3
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ... 27 4.3
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 26 7.5
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 26 7.5
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 26 7.5
M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein ( C.ele... 25 10.0
M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein ( C.ele... 25 10.0
L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated p... 25 10.0
L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated p... 25 10.0
AC084153-16|AAK84590.1| 233|Caenorhabditis elegans Hypothetical... 25 10.0
>Z81532-5|CAE17816.1| 101|Caenorhabditis elegans Hypothetical
protein F36F2.8 protein.
Length = 101
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 9/61 (14%)
Frame = +3
Query: 51 VIIAI*DGFLVTKRLHTRVCFHAINKNACHHG---------ALTGQFCPATTTLTNYICN 203
+I+ + L T+ R F + CHHG +T QFCP N C
Sbjct: 8 IILILPISILSTQHRTCRRSFQCLTNEVCHHGYCQSFDDNRCITSQFCPRNFKCINGNCE 67
Query: 204 R 206
+
Sbjct: 68 K 68
>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
protein C36B7.5b protein.
Length = 1148
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 90 RLHTRVCFHAINKNACHHGALTGQFCP 170
RL R C +A N NAC A CP
Sbjct: 515 RLRNRKCMNAENNNACDGPAQDQMSCP 541
>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
protein C36B7.5a protein.
Length = 1121
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 90 RLHTRVCFHAINKNACHHGALTGQFCP 170
RL R C +A N NAC A CP
Sbjct: 515 RLRNRKCMNAENNNACDGPAQDQMSCP 541
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical protein
ZK287.4 protein.
Length = 1208
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 230 GASFRPEGSVTNVIGECSCGR 168
GA+F P GS+ N + C R
Sbjct: 1160 GAAFSPTGSLNNFVSNSQCNR 1180
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 108 CFHAINKNACHHGA-LTGQFCP---ATTTLTNYICNRSLWSETRTCEFTSHQQ*VRVTGS 275
C+ + N +GA LT Q C A+ T++ I N++ + TC+ T+ Q + ++ S
Sbjct: 1781 CYQGLLVNNQTYGAPLTLQGCYGDCASITISTTIQNQNHTATLLTCDPTTVCQQLNMSNS 1840
Query: 276 CRWLRP 293
C+ + P
Sbjct: 1841 CQTVEP 1846
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 108 CFHAINKNACHHGA-LTGQFCP---ATTTLTNYICNRSLWSETRTCEFTSHQQ*VRVTGS 275
C+ + N +GA LT Q C A+ T++ I N++ + TC+ T+ Q + ++ S
Sbjct: 1781 CYQGLLVNNQTYGAPLTLQGCYGDCASITISTTIQNQNHTATLLTCDPTTVCQQLNMSNS 1840
Query: 276 CRWLRP 293
C+ + P
Sbjct: 1841 CQTVEP 1846
>M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 429
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 74 PILNRNDNTRKTKYTSTTYEPLP 6
P+LN N++ K TTY LP
Sbjct: 403 PVLNGNNSNNNLKQGQTTYNGLP 425
>M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 467
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 74 PILNRNDNTRKTKYTSTTYEPLP 6
P+LN N++ K TTY LP
Sbjct: 441 PVLNGNNSNNNLKQGQTTYNGLP 463
>L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated
protein 86, isoform b protein.
Length = 467
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 74 PILNRNDNTRKTKYTSTTYEPLP 6
P+LN N++ K TTY LP
Sbjct: 441 PVLNGNNSNNNLKQGQTTYNGLP 463
>L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated
protein 86, isoform a protein.
Length = 429
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 74 PILNRNDNTRKTKYTSTTYEPLP 6
P+LN N++ K TTY LP
Sbjct: 403 PVLNGNNSNNNLKQGQTTYNGLP 425
>AC084153-16|AAK84590.1| 233|Caenorhabditis elegans Hypothetical
protein Y22D7AL.16 protein.
Length = 233
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 44 FSCYHCDLRWVSSNQTFAH 100
F+CYHCD + S + AH
Sbjct: 82 FNCYHCDKKSESIERLAAH 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,907,200
Number of Sequences: 27780
Number of extensions: 161019
Number of successful extensions: 333
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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