Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F19
         (333 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   2.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   3.0  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   5.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   5.2  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 108 CFHAINKNACHHGALTGQFCP 170
           C +  + N C  G L G  CP
Sbjct: 185 CIYVQSINLCMAGRLFGYLCP 205


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 99  CANVWLLETHLKSQ**HEKNKIHVY 25
           C  +W+L+T +  +    + KIHV+
Sbjct: 131 CGRLWILDTGILGEKQICRPKIHVF 155


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 44  FSCYHCDLRWVSSNQTFAHPRV 109
           + C HCD ++V       H RV
Sbjct: 38  YHCSHCDRQFVQVANLRRHLRV 59


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 144 HDGKHFY*LRESTRGCANVWLLETHLKS 61
           H G   +   + +  C N  +L +HLKS
Sbjct: 11  HFGSKPFKCEKCSYSCVNKSMLNSHLKS 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,086
Number of Sequences: 438
Number of extensions: 1851
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)