Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F18
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   0.43 
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    25   1.8  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    24   3.1  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    23   5.3  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    23   7.1  
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    22   9.3  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    22   9.3  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    22   9.3  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    22   9.3  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 130 GARRTSLYELCLQPAPLLTPPKTTHMVPILCLF 32
           GARR S+YE+ L P   L       M    CLF
Sbjct: 356 GARRGSVYEVPLNPTQALAVRDALSMAIYNCLF 388


>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 179

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 72 PRKRHTWFPYFVCLLICS 19
          P KR T+F Y V +L+CS
Sbjct: 5  PSKRLTYFEYAVGVLLCS 22


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -1

Query: 174 YFANIIETIDTVCVPAHDALHFTNCACN 91
           Y  N I       +P H + H T+C  N
Sbjct: 28  YLVNFISCPSIHSIPFHISTHLTSCQAN 55


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 103 LCLQPAPLLTPPKTTHMVPILCLFVNL 23
           L L   PLL       + PIL +F+NL
Sbjct: 55  LFLTRLPLLAQAPEKELEPILAVFINL 81


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 145 YGMRTGARRTSLYE 104
           YG+R  A R SLYE
Sbjct: 300 YGLRVDAARESLYE 313


>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 83  PPYAPENDTHGSHTLSV 33
           P + PE  THG  T +V
Sbjct: 63  PHFNPEGKTHGDRTAAV 79


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 177 NYFANIIETIDTVCVPAHDALHFTNCACNPRPSLRPRK 64
           +Y+A+ +E I+ + V   + L  T      R   RPRK
Sbjct: 196 SYYAHNLERIEDLLVEMEENLRPTKKKSGSRGRGRPRK 233


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +2

Query: 62  RFRGRKEGRG 91
           R+RGR++GRG
Sbjct: 451 RYRGRRDGRG 460


>SPBC16C6.06 |pep1|vps10|sorting receptor for
          CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 51 FPYFVCLLICSSITASC 1
          FP F CLL+  S+   C
Sbjct: 15 FPMFGCLLLIVSLITGC 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 789,393
Number of Sequences: 5004
Number of extensions: 13214
Number of successful extensions: 39
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)