Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F18
(180 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0672 + 5147916-5147976,5148087-5148166,5148329-5148973,514... 28 1.2
08_02_0512 + 18012909-18013025,18013656-18013751,18014102-180143... 27 2.8
03_05_0208 + 22006032-22006673,22006695-22007078 26 3.7
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 26 4.9
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 26 4.9
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 25 6.5
07_03_0736 - 21079880-21080185,21080231-21080429,21080531-210807... 25 6.5
04_04_0913 + 29363908-29363942,29364355-29364607,29364666-293649... 25 6.5
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 25 6.5
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 25 8.6
10_08_0341 + 16942332-16942361,16942907-16943347 25 8.6
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 25 8.6
>01_01_0672 +
5147916-5147976,5148087-5148166,5148329-5148973,
5149111-5149341
Length = 338
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 161 LSKLSIRYAYRRTTHFTLRTVPATRAPPYAPENDTHGSHTLS 36
L+K+ + YRR ++ + A A P P + HT+S
Sbjct: 197 LAKMHMETTYRRRQYYYQQAAAAAEAAPPPPSGNNQLQHTMS 238
>08_02_0512 +
18012909-18013025,18013656-18013751,18014102-18014389,
18014551-18014750,18015313-18015548,18015809-18015951,
18016059-18016130,18016231-18016458
Length = 459
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 120 ALHFTNCACNPRPSLRP 70
AL F C C RPSLRP
Sbjct: 4 ALAFPTCCCCRRPSLRP 20
>03_05_0208 + 22006032-22006673,22006695-22007078
Length = 341
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -3
Query: 163 HYRNY--RYGMRTGARRTSLYELCLQPAPLLTPPK 65
HYR Y RYG A R + L+P LT P+
Sbjct: 222 HYRGYQWRYGEVDNAARARMVSRPLEPCRALTAPE 256
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 170 SLTLSKLSIRYAYRRTTHFTLRTVPATRAPPYAPENDTHGSHTL 39
SL L +LS+ Y + FT+ P P N +H+L
Sbjct: 151 SLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSL 194
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 5 EAVIDEQINKQTKYGNHVCRFRGRKEGRGLQAQFVK*SASCAGTHTVSIVSIM 163
E ++D K+ V R + EG+GL + V+ +C TH +I IM
Sbjct: 427 EMILDHAHELGRKFRVIVVDSRPKLEGQGLLRRLVEKGINCTYTHINAISYIM 479
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 170 SLTLSKLSIRYAYRRTTHFTLRTVPATRAPPYAPENDTHGSHTL 39
SL L +LS+ Y + FT+ P P N +H+L
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSL 194
>07_03_0736 -
21079880-21080185,21080231-21080429,21080531-21080768,
21080888-21081098,21081181-21081320,21081400-21081537,
21086208-21087036
Length = 686
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 133 TGARRTSLYELCLQPAPLLTPPKTTHMVPILCLFVN 26
TG + Y LQ LLT T HM+ ++C + N
Sbjct: 550 TGKKNNDCYN-SLQSEDLLTLVSTNHMILLVCSWKN 584
>04_04_0913 +
29363908-29363942,29364355-29364607,29364666-29364983,
29365197-29365550
Length = 319
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 60 VVFGGVRRGAGCRHSS*SEVRRAPVRIP 143
+ G VR G G RH S RR+P+ +P
Sbjct: 279 IPLGRVRAGLGDRHHSPPARRRSPLLMP 306
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 170 SLTLSKLSIRYAYRRTTHFTLRTVPATRAPPYAPENDTHGSHTL 39
SL L +LS+ Y + FT+ P P N +H+L
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSL 194
>10_08_0343 -
16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 99 ACNPRPSLRPRKRHTWFPYF 40
A P PS +P++ H+ FP F
Sbjct: 763 AHGPNPSAQPKRLHSSFPVF 782
>10_08_0341 + 16942332-16942361,16942907-16943347
Length = 156
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 143 RYAYRRTTHFTLRTVPATRAPPYAPEN 63
RY + T TLR P+ PP PE+
Sbjct: 125 RYLLAKDTPATLRPPPSEGTPPSTPEH 151
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 145 YGMRTGARRTSLYELCLQPAPLLTPP 68
YG R G +S LQPAP+L P
Sbjct: 11 YGPRRGGCESSSSRPTLQPAPILRHP 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,368,433
Number of Sequences: 37544
Number of extensions: 95618
Number of successful extensions: 342
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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