Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F18
(180 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80445-1|AAB37794.1| 855|Caenorhabditis elegans Hypothetical pr... 27 1.3
U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z78546-5|CAO79773.1| 962|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z78546-4|CAB01771.3| 920|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z81070-2|CAB03007.1| 491|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 25 9.4
Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 25 9.4
AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical... 25 9.4
>U80445-1|AAB37794.1| 855|Caenorhabditis elegans Hypothetical
protein C50F2.3 protein.
Length = 855
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 148 RYGMRTGARRTSLYELCLQPAPLLTPPKTTHMVPILCLFVNLFVDHGL 5
RYG + R L+E CL+ P TH I L+ L +HGL
Sbjct: 571 RYGGKKLERARDLFEQCLENCP------PTHAKYIFLLYAKLEEEHGL 612
>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical
protein F28E10.1a protein.
Length = 1134
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 170 SLTLSKLSIRYAYRRTTHFTLRTVPATRAPP 78
S+ S S Y Y RT H TL +P+ R PP
Sbjct: 15 SIIRSSSSGSYPYPRT-HTTLMVIPSNRPPP 44
>Z78546-5|CAO79773.1| 962|Caenorhabditis elegans Hypothetical protein
T21H8.1b protein.
Length = 962
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 124 RRTSLYELCLQPAPLLTPPKTTHMVP 47
R+ + E+CL+P LL P H P
Sbjct: 923 RKKAKNEICLEPEELLCPQVLVHKYP 948
>Z78546-4|CAB01771.3| 920|Caenorhabditis elegans Hypothetical
protein T21H8.1a protein.
Length = 920
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 124 RRTSLYELCLQPAPLLTPPKTTHMVP 47
R+ + E+CL+P LL P H P
Sbjct: 881 RKKAKNEICLEPEELLCPQVLVHKYP 906
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 132 PAHDALHFTNCACNPRPSLRPRKRH 58
P HDA + CAC PR ++ +RH
Sbjct: 276 PGHDAAY---CACPPRSAVFVARRH 297
>Z81070-2|CAB03007.1| 491|Caenorhabditis elegans Hypothetical
protein F26E4.3 protein.
Length = 491
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -3
Query: 73 PPKTTHMVPILCLFVNLF 20
PP + ++P+LCL V ++
Sbjct: 41 PPNSVFLLPVLCLIVPIY 58
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 106 ELCLQPAPLLTPPKT 62
++C QPAP+ PP T
Sbjct: 670 KICCQPAPVCLPPPT 684
>Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical
protein K08E7.5d protein.
Length = 541
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 106 ELCLQPAPLLTPPKT 62
++C QPAP+ PP T
Sbjct: 315 KICCQPAPVCLPPPT 329
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 106 ELCLQPAPLLTPPKT 62
++C QPAP+ PP T
Sbjct: 267 KICCQPAPVCLPPPT 281
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
K08E7.5a protein.
Length = 1221
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 106 ELCLQPAPLLTPPKT 62
++C QPAP+ PP T
Sbjct: 995 KICCQPAPVCLPPPT 1009
>AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical
protein Y54E10A.16a protein.
Length = 427
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 170 SLTLSKLSIRYAYRRTTHFTLRTV 99
+L+ +LS + RRT H+T RTV
Sbjct: 279 TLSTEQLSNKTRNRRTRHYTTRTV 302
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,540,682
Number of Sequences: 27780
Number of extensions: 79595
Number of successful extensions: 296
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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