Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F17
(255 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 26 0.69
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 25 1.2
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 24 3.7
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe... 24 3.7
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 23 4.9
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 23 6.4
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 23 6.4
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi... 23 6.4
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 23 6.4
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 23 6.4
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 23 8.5
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 23 8.5
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 23 8.5
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 23 8.5
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 26.2 bits (55), Expect = 0.69
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +2
Query: 104 KGSKNQNVAYGCLLLI--LEGSL 166
+G KNQNV YGC + + L+G+L
Sbjct: 334 EGIKNQNVCYGCSVSLKSLKGTL 356
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 1.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 197 KIWSSEYFILLGILQVLAVSNRKQHFGF 114
K+++ FI+ GIL L V+N K+ GF
Sbjct: 181 KVFTVAAFIVNGILCNLGVNNEKKFIGF 208
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 23.8 bits (49), Expect = 3.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 144 SKQP*ATFWFFDPLSVIMGKAHILHD 67
+ P F PLS ++ K+H LHD
Sbjct: 179 TSSPLKDFQSSPPLSTVLQKSHSLHD 204
>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 537
Score = 23.8 bits (49), Expect = 3.7
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 230 IDLFLMIHVFFKIWSSEYFI 171
+D ++++ +FF IW S FI
Sbjct: 468 VDAYILLPLFFVIWLSYKFI 487
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 23.4 bits (48), Expect = 4.9
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -2
Query: 197 KIWSSEYFI--LLGILQVLAVSNRKQHFGF 114
+I+ S F+ +LGI Q L S HFGF
Sbjct: 712 QIFISNKFVEPVLGIFQKLISSKVNDHFGF 741
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 23.0 bits (47), Expect = 6.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 125 VAYGCLLLILEGSLTK*NIQM 187
+ Y CL+LI SLTK N+Q+
Sbjct: 464 IYYSCLILIHRHSLTK-NLQV 483
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 23.0 bits (47), Expect = 6.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 101 DKGSKNQNVAYGCLLLI 151
DKGS ++N Y C LI
Sbjct: 59 DKGSLDRNQVYACFRLI 75
>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 23.0 bits (47), Expect = 6.4
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +2
Query: 38 SFQNYVNTLSSWSI*AFPIITDKGSKNQNVAYGCLLLILEGSLTK 172
+F N VN +P+ G + NV YG +++ +L K
Sbjct: 23 AFHNNVNQRFDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEK 67
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 23.0 bits (47), Expect = 6.4
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 29 LYVSFQNYVNTLSSWSI*AFPIIT---DKGSKNQNVAYGCLLLI 151
LYVSF + + AFP+ + + S+N ++ YGC+ +I
Sbjct: 205 LYVSFNEALGIVREKK--AFPLASLAFEFLSRNGHINYGCIYII 246
>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 224 LFLMIHVFFKIWSSEYFILLGILQVLAVSNRK 129
+F+ I V +++ F +G+LQ +SN+K
Sbjct: 174 IFIRIPVIVAMYAWTLFAAMGVLQNSNLSNKK 205
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 22.6 bits (46), Expect = 8.5
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +1
Query: 157 RIPNKMKYSDDQILKKTC 210
R+ K+++ DD+I+ TC
Sbjct: 407 RLITKLQFDDDKIIVSTC 424
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 22.6 bits (46), Expect = 8.5
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = -2
Query: 224 LFLMIHVFFKIWSSEYFILLGILQVLAVS 138
L+L+ F ++W S+Y G+ + +S
Sbjct: 300 LYLLFTAFAEVWISQYHFTSGLSGLTYIS 328
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 22.6 bits (46), Expect = 8.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 18 KKFFYMFLFKIMSTHC 65
+KFFY FLF S C
Sbjct: 155 QKFFYQFLFYGFSAAC 170
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 22.6 bits (46), Expect = 8.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 18 KKFFYMFLFKIMSTHCHRGVYELSPL 95
+ FF +LF I+ T C V+ L
Sbjct: 540 RSFFIFYLFTIVITFCMSAVFRFIAL 565
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,090,667
Number of Sequences: 5004
Number of extensions: 19758
Number of successful extensions: 39
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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