Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F17
         (255 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0154 + 14509979-14512033                                         30   0.30 
01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789...    27   2.8  
06_03_0378 + 20070955-20071354,20071483-20072132                       26   4.8  
09_04_0457 - 17736158-17737336                                         25   6.4  
04_03_1001 - 21609280-21610131                                         25   6.4  
06_03_0032 - 15697530-15697669,15699215-15699437,15699823-156999...    25   8.4  
05_07_0132 + 27903236-27903376,27903498-27903659,27903755-279039...    25   8.4  
04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410     25   8.4  
01_06_0898 - 32832665-32832724,32832761-32832815,32832957-328331...    25   8.4  

>07_03_0154 + 14509979-14512033
          Length = 684

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 34  CFFSKLCQHTVIVEYMSFPHYN 99
           C+FS  C   V V+++ F HYN
Sbjct: 627 CYFSHSCSPNVFVQFVLFDHYN 648


>01_01_0998 -
           7894254-7894515,7895133-7895270,7896049-7896246,
           7896334-7896786,7896877-7897098,7898100-7898227,
           7899325-7899432
          Length = 502

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 170 LLGILQVLAVSNRKQHFGFLTPYQL*WGKLI 78
           ++G+L +L V     H+G    Y + WG  +
Sbjct: 378 IIGVLDILLVLRLHVHYGITDKYMVLWGSAL 408


>06_03_0378 + 20070955-20071354,20071483-20072132
          Length = 349

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 255 YVTLILNTNRFISNDTC 205
           +VTL+LN   F++ND C
Sbjct: 121 HVTLVLNEEGFLTNDDC 137


>09_04_0457 - 17736158-17737336
          Length = 392

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 12  LCKKFFYMFLFKIMSTHCH--RGVYELSPL 95
           L   FF++  F I   HC+  RG Y  +PL
Sbjct: 54  LIAAFFFLGFFSIYVRHCYGGRGDYSTTPL 83


>04_03_1001 - 21609280-21610131
          Length = 283

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 61  CVDIILKRNI*KNFLHNH 8
           CV+I +KR++ K ++HNH
Sbjct: 201 CVEIGVKRHVLKVWMHNH 218


>06_03_0032 -
           15697530-15697669,15699215-15699437,15699823-15699929,
           15700047-15700224,15700393-15700455,15700474-15700602,
           15701211-15701430,15702162-15702262,15702954-15703062,
           15705169-15705290,15705473-15705515,15705848-15705903,
           15705983-15706089,15706167-15706342,15706507-15706618,
           15706711-15706759,15707184-15707276,15707452-15707571,
           15707686-15707787,15709442-15709540,15710103-15710237,
           15710421-15710499,15710747-15710822,15710904-15710993,
           15711139-15711217,15711304-15711338,15711457-15711531,
           15712628-15713375
          Length = 1221

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +2

Query: 89  PIITDKGSKNQN 124
           P+ITD+GSKNQ+
Sbjct: 924 PLITDQGSKNQS 935


>05_07_0132 +
           27903236-27903376,27903498-27903659,27903755-27903903,
           27903999-27904325,27905123-27905323,27906095-27906155,
           27906517-27906718,27906899-27907020,27907143-27907247,
           27907369-27907452
          Length = 517

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 230 IDLFLMIHVFFKIWSSEYFIL-LGILQVLAVSNRK 129
           + L L +H F  +WSS  F++ +G+L +   SN K
Sbjct: 52  LSLQLKLHAFL-LWSSVGFLMPIGVLLIRVTSNVK 85


>04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410
          Length = 1279

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 179 YFILLGILQVLAVSNRKQHFGF 114
           YF+ LGI  V   +N  QH+ F
Sbjct: 745 YFLFLGIAVVCITANIVQHYNF 766


>01_06_0898 -
           32832665-32832724,32832761-32832815,32832957-32833135,
           32833218-32833328,32833600-32833647,32833810-32833949,
           32834402-32834539,32834660-32834804,32834936-32835002,
           32835226-32835329,32835444-32835647
          Length = 416

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 248 HLF*TLIDLFLMIHVFFKIWSSEYFILLGILQVLAVSNRKQHF 120
           +LF     + L +H F     +   +L+G L + AV N   HF
Sbjct: 374 NLFFFRASVLLSVHSFPSKKENSLLLLVGYLNLKAVDNPNSHF 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,088,508
Number of Sequences: 37544
Number of extensions: 99391
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)