Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F17
         (255 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical pr...    26   4.3  
U50309-3|AAG24138.2|  343|Caenorhabditis elegans Seven tm recept...    25   5.6  

>Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical
           protein Y6G8.4 protein.
          Length = 328

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 2   HEVIM*EVFLYVS--FQNYVNTLSSWSI*AFPIITDKGSKNQNVAYGCLLLIL 154
           H +++  +  Y+S  F  YV+ ++     +FP+I  +  K   +AY C  +++
Sbjct: 21  HWILLMMLLSYISLPFYIYVHKINKQREESFPLIMKQFYKMVKIAYFCFFMVI 73


>U50309-3|AAG24138.2|  343|Caenorhabditis elegans Seven tm receptor
           protein 145 protein.
          Length = 343

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 221 FLMIHVFFKIWSSEYFILLGILQ-VLAVSNR 132
           F++  +FFKIW +  F  L   + + +VSNR
Sbjct: 311 FILRFIFFKIWKNPVFNYLNTSERMKSVSNR 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,846,664
Number of Sequences: 27780
Number of extensions: 106308
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)