Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F16
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    27   1.2  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   1.6  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   1.6  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   3.7  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   3.7  
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    25   4.9  
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    25   4.9  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   4.9  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    24   8.6  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    24   8.6  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 292 DDELLELCQRCAKLTKSKLAYPACCS 369
           DD LL+   R A LT++ L YP+  S
Sbjct: 626 DDNLLDFILRDASLTRNPLVYPSAKS 651


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +1

Query: 58  KHTREKILFRVPSEFIVFDY*KNLVVKKMSV 150
           ++TRE  L ++ +E ++ DY   LVV+K+++
Sbjct: 853 EYTREGALVKIFNESVLEDYPAQLVVEKIAI 883


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 202 LAMFVRESNARPPWLAPGSGVFTESAECHTDDELLELCQRCAKLTKSKLAY 354
           LA F  E++ R  W+AP      E+ +C+   + ++     A LT   L +
Sbjct: 138 LASFSIENSLRIKWVAPDKAKLNETWKCYLHIQDVKKSYFLASLTSRSLQF 188


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 283 CHTDDELLELCQRCAKLTKSKLAY 354
           CHT D L E+C     L   KL Y
Sbjct: 476 CHTQDTLNEVCTDIIHLYHQKLDY 499


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 21  TVQLSSRLTNRPQTHTRKNSIPG 89
           T +L +R  N  Q H+  NS+PG
Sbjct: 255 TCKLYARFLNNAQMHSLANSLPG 277


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 226 SIPERTSPGRRAAIRRLLNFSR 161
           ++P+R  P R + IRR  N S+
Sbjct: 128 TVPKRLGPKRASKIRRFFNLSK 149


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 226 SIPERTSPGRRAAIRRLLNFSR 161
           ++P+R  P R + IRR  N S+
Sbjct: 128 TVPKRLGPKRASKIRRFFNLSK 149


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 3   TRVGTDTVQLSSRLTNRPQTHTRKN 77
           +R  TDT+ +SS L+ + +   RKN
Sbjct: 200 SRPSTDTIGVSSALSKKKKKRNRKN 224


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 171 FSNLRIAARLPGDVRSGIERETSVACT 251
           FS   I  +LPGD +   E  TSV  T
Sbjct: 294 FSVPEIRIQLPGDAKENKETRTSVEIT 320


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 248 ASHGGLAFDSRTNIARQTSSNTQVAEFFAEKKITDIFLTTKF 123
           A++    FD  TN+    ++NT     F+ + I+  FL   F
Sbjct: 122 ANNPSSTFDMSTNLFNSKNANTSFTNAFSNEGISPGFLRDCF 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,438,196
Number of Sequences: 5004
Number of extensions: 25498
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)