Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F16
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 31 0.37
09_02_0107 + 4354470-4354589,4355058-4355156,4355292-4355596,435... 29 0.86
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 29 1.1
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 28 2.0
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256... 28 2.0
05_03_0362 - 12973488-12974251,12975346-12975580,12976410-129767... 28 2.6
02_05_1327 - 35718908-35719270,35719537-35719953,35720183-35720557 27 3.5
11_06_0257 + 21746643-21748091 27 4.6
11_06_0258 + 21750922-21752272,21752971-21753377 26 8.1
01_07_0299 + 42594363-42594424,42594516-42594798,42595185-425954... 26 8.1
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 30.7 bits (66), Expect = 0.37
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = -1
Query: 243 PRRSRVRFPNEHRQADEQQYA 181
PR +++R PN+H QA+E+QY+
Sbjct: 695 PRIAQMREPNQHAQAEERQYS 715
>09_02_0107 +
4354470-4354589,4355058-4355156,4355292-4355596,
4356101-4356278,4356368-4356481,4356543-4356674,
4356784-4356888
Length = 350
Score = 29.5 bits (63), Expect = 0.86
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 243 PRRSRVRFPNEHRQADEQQYA 181
PR +++R PN+H Q +E+QY+
Sbjct: 86 PRIAQIREPNQHAQIEERQYS 106
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 29.1 bits (62), Expect = 1.1
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 243 PRRSRVRFPNEHRQADEQQYA 181
PR +++R PN+H Q +E+QY+
Sbjct: 478 PRIAQMREPNQHAQTEERQYS 498
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 28.3 bits (60), Expect = 2.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 241 WLAPGSGVFTESAECHTD 294
W PG G+F CHTD
Sbjct: 803 WTVPGGGLFPNLRRCHTD 820
>06_03_0497 +
21424732-21424899,21424992-21425057,21425176-21425634,
21425945-21426088,21426172-21426306,21426418-21426808,
21427256-21427428,21427508-21427615,21427715-21427810,
21427896-21428003,21428644-21428792,21428924-21428925,
21429071-21429207,21429538-21429842,21430922-21431099,
21431192-21431305,21431373-21431504,21431610-21431843
Length = 1032
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 243 PRRSRVRFPNEHRQADEQQYA 181
PR +++R PN+H Q +E+QY+
Sbjct: 725 PRIAQMREPNQHVQTEERQYS 745
>05_03_0362 -
12973488-12974251,12975346-12975580,12976410-12976738,
12977277-12977404,12977695-12977879,12977972-12978165,
12978239-12978368,12978507-12978566,12979037-12979059,
12979158-12979218,12979677-12979748,12979804-12979924,
12980351-12980415,12980973-12981089,12981970-12982239
Length = 917
Score = 27.9 bits (59), Expect = 2.6
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +1
Query: 190 LLVCLAMFVRESNARPPWLAPGSGVFTESAECHTDDELLELCQRCAKLTKSKLAYPACCS 369
L LA F+ S+ARPP+LA G +F + +L E C A L L +P S
Sbjct: 637 LKALLASFL-SSHARPPYLAQGIELF-RRGKLEIGTKLAEFCSH-ALLALDVLTHPRALS 693
>02_05_1327 - 35718908-35719270,35719537-35719953,35720183-35720557
Length = 384
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = +1
Query: 160 SAKNSATCVLLLVCLAMFVRESNARPPWLAPGS 258
+AKN LLL A V E AR WLAPGS
Sbjct: 341 AAKNPDLLPLLLAAAACTVGEE-ARRRWLAPGS 372
>11_06_0257 + 21746643-21748091
Length = 482
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = +1
Query: 169 NSATCVLLLV----CLAMFVRESNARPPWLAPGSG 261
++A CV+LL+ C + R + R W++PG+G
Sbjct: 202 DAAACVVLLLHMPRCELSYARPGDERWTWISPGAG 236
>11_06_0258 + 21750922-21752272,21752971-21753377
Length = 585
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +1
Query: 172 SATCVLLLV----CLAMFVRESNARPPWLAPGSG 261
+A CV+LL+ C + R + R W++PG+G
Sbjct: 201 AAACVVLLLHKPMCELSYARPGDERWTWVSPGAG 234
>01_07_0299 +
42594363-42594424,42594516-42594798,42595185-42595409,
42596395-42596592,42596871-42597325,42597824-42597962,
42598035-42598113,42598686-42598924,42599058-42599362,
42599449-42599560,42599640-42599804,42599933-42600071,
42600111-42600219,42600733-42600823,42600940-42601064,
42601148-42601297,42601383-42601455,42601630-42601810,
42601888-42602046,42602939-42603085,42603176-42603220,
42603305-42603382,42603565-42603719,42603875-42603927,
42604012-42604090,42604271-42604357
Length = 1310
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -3
Query: 295 HLYDIQLIL*RPRYRVQATEVSRSIPE-----RTSPGRRAAIRRLL 173
H Y QLI P ++ TE S +P+ R P R AA+ ++L
Sbjct: 709 HSYSTQLIATSPNMEIEHTERSNLVPQLQCSPRPLPLRAAAMSKIL 754
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,440,257
Number of Sequences: 37544
Number of extensions: 166859
Number of successful extensions: 404
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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