Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F16
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-5|AAK68311.1|  234|Caenorhabditis elegans Hypothetical pr...    28   1.8  
AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical ...    28   1.8  
AF077542-1|AAC26295.2|  386|Caenorhabditis elegans Serpentine re...    27   3.2  

>U28991-5|AAK68311.1|  234|Caenorhabditis elegans Hypothetical
           protein F08F8.8 protein.
          Length = 234

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 257 LPGASHGGLAFDSRTNIARQTSSNTQVAE 171
           L  +SHGG   D +T  +RQTS  T   E
Sbjct: 29  LTASSHGGFDIDEKTVSSRQTSFKTVTTE 57


>AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical
           protein Y66D12A.11 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +1

Query: 130 VVKKMSVIFFSAKNSATCVLLLVCLAMFVRESN 228
           +++KM  IF+S+++S   +++LV L +F   S+
Sbjct: 299 MIRKMERIFYSSESSCWLIVVLVMLTIFAYRSS 331


>AF077542-1|AAC26295.2|  386|Caenorhabditis elegans Serpentine
           receptor, class w protein66 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 94  SEFIVF-DY*KNLVVKKMSVIFFSAKNSATCVLLLVCLAMFV 216
           S+F  F D  K ++VK  + IFF A+ S      L C+A+F+
Sbjct: 8   SDFKDFSDSNKKILVKIANFIFFLAEKSKNAYNWLACVAVFI 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,228,665
Number of Sequences: 27780
Number of extensions: 154031
Number of successful extensions: 410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)