Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F15
(244 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 24 3.2
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 23 4.3
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 23 4.3
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 23 4.3
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 23 5.6
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 23 7.5
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom... 23 7.5
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 23 7.5
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 22 9.9
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar... 22 9.9
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 22 9.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 22 9.9
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 22 9.9
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 22 9.9
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb... 22 9.9
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Frame = -3
Query: 200 VYRYPEGFYV-VSHLD 156
+YRYPEG Y+ + H D
Sbjct: 117 IYRYPEGCYLDIDHND 132
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 23.4 bits (48), Expect = 4.3
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +2
Query: 95 KAEFTVLV*AVRSGALDTPH--GLDARPHRSPQDTDRHVSGAEAHTDLDYY 241
K F +V V + +L + G + S QD D V G HT+ Y
Sbjct: 50 KGRFLPIVSGVAAASLTAGYLLGKNTSNASSSQDNDHPVVGEHVHTETQSY 100
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 23.4 bits (48), Expect = 4.3
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = +2
Query: 53 GGGLIKLFRAKYTSKAEFTVLV*AVRSGALDTPHGLDARPHRSPQDTDRHVSGAEAHTDL 232
G G KL A + + V A RS + + ++P H+S A DL
Sbjct: 13 GTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDL 72
Query: 233 DYY 241
D++
Sbjct: 73 DFF 75
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 23.4 bits (48), Expect = 4.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 176 RSPQDTDRHVSGAEAHTDLDY 238
+SP D D H+ E T +DY
Sbjct: 6 KSPIDVDLHLDNEEERTFVDY 26
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 23.0 bits (47), Expect = 5.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 144 SSAPERTAYTSTVNSALLVYLARNSLIKPPPS-ALATPIVSA 22
SS+PER TS + A + +S++ PP S ++P+ S+
Sbjct: 70 SSSPERELPTSPSHHANTEIDSSSSMLPPPSSDPFSSPLSSS 111
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 22.6 bits (46), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +1
Query: 112 ASVGS-TLRSTRYTSWSRCET 171
+S GS T R+ RYT+WS +T
Sbjct: 157 SSFGSATDRNMRYTAWSAMKT 177
>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 341
Score = 22.6 bits (46), Expect = 7.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 108 VNSALLVYLARNSLIKPPPSALATPIV 28
++S LL + RN + PP ATP++
Sbjct: 314 ISSLLLNFWHRNQPLVLPPKVGATPVL 340
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 22.6 bits (46), Expect = 7.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 108 VNSALLVYLARNSLIKPPPSALATP 34
V+S L Y+ RNS + PP P
Sbjct: 215 VDSGLQKYIDRNSNLTPPALGAGVP 239
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 22.2 bits (45), Expect = 9.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 58 SPLCPGHPHSFRHCLVP 8
S +C GHP ++ LVP
Sbjct: 712 SEMCFGHPSTYAPLLVP 728
>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 22.2 bits (45), Expect = 9.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 120 YTSTVNSALLVYLARNSLIKPPPSA 46
Y T+N+A L Y + L+ PP A
Sbjct: 281 YRDTLNAANLTYSVEDWLLWDPPVA 305
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 22.2 bits (45), Expect = 9.9
Identities = 7/23 (30%), Positives = 11/23 (47%)
Frame = +2
Query: 161 DARPHRSPQDTDRHVSGAEAHTD 229
D H+ P+D + H E H +
Sbjct: 406 DKEHHKGPKDKEHHQGPKEKHNE 428
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 22.2 bits (45), Expect = 9.9
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 144 SSAP-ERTAYTSTVNSALLVYLARNSLIKPPPSALATPIVSATAS 13
SSAP + S VN+ + A NS++ PPPS P +A A+
Sbjct: 140 SSAPASQEPSASGVNAPTVS--APNSMVSPPPS-FQPPSAAAPAT 181
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 22.2 bits (45), Expect = 9.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 233 LNQCEPRLQIHVYRYPEGFYVVSH 162
+N C L + YP GFY +H
Sbjct: 1177 INCCFATLFFFGWYYPSGFYEFNH 1200
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 22.2 bits (45), Expect = 9.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 114 STVNSALLVYLARNSLIKPPPSALATP 34
+T +S++ +Y L+ PP ATP
Sbjct: 516 ATEDSSIYIYSPAGRLLLPPVVVAATP 542
>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 22.2 bits (45), Expect = 9.9
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -3
Query: 218 PRLQIHVYRYPEGFYVVSHLDHEVYLVLRSVLP 120
P IH+ +Y E H L LR++LP
Sbjct: 66 PTALIHITKYSEALASRLLKGHMTQLSLRTILP 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 908,170
Number of Sequences: 5004
Number of extensions: 14779
Number of successful extensions: 41
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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