Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F15
         (244 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465           26   4.9  
08_02_1093 - 24271826-24273427                                         26   4.9  
08_02_1076 - 24151334-24152241,24152334-24152610                       26   4.9  
01_06_0460 + 29545030-29546377,29546463-29547085                       26   4.9  
12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61...    25   8.5  
11_06_0669 - 26084906-26087350                                         25   8.5  
10_08_0809 - 20725858-20725950,20726375-20726545,20726895-207271...    25   8.5  
06_03_0419 - 20583812-20584123,20585911-20586006,20586195-205862...    25   8.5  
01_06_1623 - 38716606-38717424                                         25   8.5  

>09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465
          Length = 1058

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 8   RHEAVAETMGVAR 46
           RHE VA TMG+AR
Sbjct: 284 RHECVARTMGIAR 296


>08_02_1093 - 24271826-24273427
          Length = 533

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 131 SGALDTPHGLDARPHRSPQDTDRHVSGAEA 220
           +GA  +    DA PHRS      HV+GA A
Sbjct: 124 TGAFASQSSYDAAPHRSLSYHGFHVAGAAA 153


>08_02_1076 - 24151334-24152241,24152334-24152610
          Length = 394

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 144 SSAPERTAYTSTVNSALLVYLARNSLIKPPPSALA 40
           S A +  ++  T  S  +VY+   S+ KPPP+  A
Sbjct: 187 SEAEQLFSWLDTCPSRSVVYVCFGSMYKPPPAQAA 221


>01_06_0460 + 29545030-29546377,29546463-29547085
          Length = 656

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 102 SALLVYLARNSLIKPPPSAL 43
           S L ++LARNSL+ P P++L
Sbjct: 179 SLLTLHLARNSLVGPLPASL 198


>12_01_0072 +
           609254-609722,610355-610421,610652-610745,610984-611127
          Length = 257

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 147 VSSAPERTAYTSTVNSALLVYLARNSLIKPPPSALATPIVSATASC 10
           +++A ER+   S +++   VY  RN+  K   +   TP  + TASC
Sbjct: 107 IAAAEERSLVKSAIST---VYTRRNTTQKRRRTNDNTPFPAGTASC 149


>11_06_0669 - 26084906-26087350
          Length = 814

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 203 HVYRYPEGFYVVSHLDHEVY--LVLRSVLP-TLAR 108
           HV+ +PE    + HL H  +   ++R VLP T+A+
Sbjct: 493 HVFSFPESIGQLRHLRHLCFRTTLIRQVLPNTIAK 527


>10_08_0809 -
           20725858-20725950,20726375-20726545,20726895-20727101,
           20727208-20727879
          Length = 380

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 81  ARNSLIKPPPSALATPI-VSATASC 10
           ARN+L  PPP +   P+ ++ T  C
Sbjct: 61  ARNTLASPPPPSFPLPVPLTTTTPC 85


>06_03_0419 -
           20583812-20584123,20585911-20586006,20586195-20586298,
           20586565-20586649
          Length = 198

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +2

Query: 59  GLIKLFRAKYTSKAEFTVLV*AVRSGALDTPHGLDARPHRSPQ 187
           G +KL R   TS     VLV    S +   P G +   H  PQ
Sbjct: 45  GTVKLIRRHLTSNVSVLVLVLQKESPSWCGPVGPNGSSHTGPQ 87


>01_06_1623 - 38716606-38717424
          Length = 272

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 53  GGGLIKLFRAKYTSKAEFTVLV*AVRSGALDTP 151
           GGG +KL R   TS  E   L   V +  LD P
Sbjct: 137 GGGEVKLVREGETSNVERVSLECVVHAALLDYP 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,442,002
Number of Sequences: 37544
Number of extensions: 111975
Number of successful extensions: 365
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)