Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F15
         (244 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   2.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   6.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   6.7  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    19   8.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   8.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 120 YTSTVNSALLVYLARNSLIKPPPSALATPIVSATASCRI 4
           YTS+VNS L V    N +    P   +  + S+T+   I
Sbjct: 531 YTSSVNSNLTVNQTVNPVAINIPGDTSIIVDSSTSGATI 569


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 43  GHPHSFRHCLVP 8
           G+P + R+CL P
Sbjct: 140 GNPWNTRYCLTP 151


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 43  GHPHSFRHCLVP 8
           G+P + R+CL P
Sbjct: 193 GNPWNTRYCLTP 204


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +3

Query: 168 DHIEALRIPIDMY 206
           +HIE + +P+ +Y
Sbjct: 107 NHIEQIPVPVPVY 119


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 188 PEGFYVVSHL 159
           PEGF + +HL
Sbjct: 405 PEGFMIPTHL 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,242
Number of Sequences: 438
Number of extensions: 900
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)