Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F14
         (348 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep: Zgc:...    47   1e-04
UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit...    45   3e-04
UniRef50_Q9WUG7 Cluster: ARL-6 interacting protein-3; n=1; Mus m...    41   0.007
UniRef50_A4RRJ9 Cluster: Predicted protein; n=1; Ostreococcus lu...    34   0.77 
UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit...    31   5.5  
UniRef50_UPI0001555FD0 Cluster: PREDICTED: similar to leucine-ri...    30   9.5  
UniRef50_Q5KKF8 Cluster: Transcriptional activator, putative; n=...    30   9.5  

>UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep:
           Zgc:92922 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 97

 Score = 46.8 bits (106), Expect = 1e-04
 Identities = 22/51 (43%), Positives = 26/51 (50%)
 Frame = +2

Query: 194 TSAPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDDSPGVEVGP 346
           T APRTA                        G+GGMWRFYT+DSPG++VGP
Sbjct: 21  TVAPRTAGTSARQRKATSSSARSGGRSTASAGTGGMWRFYTEDSPGLKVGP 71


>UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit
           beta; n=31; Eukaryota|Rep: Protein transport protein
           Sec61 subunit beta - Homo sapiens (Human)
          Length = 96

 Score = 45.2 bits (102), Expect = 3e-04
 Identities = 16/20 (80%), Positives = 20/20 (100%)
 Frame = +2

Query: 287 GSGGMWRFYTDDSPGVEVGP 346
           G+GGMWRFYT+DSPG++VGP
Sbjct: 51  GTGGMWRFYTEDSPGLKVGP 70


>UniRef50_Q9WUG7 Cluster: ARL-6 interacting protein-3; n=1; Mus
           musculus|Rep: ARL-6 interacting protein-3 - Mus musculus
           (Mouse)
          Length = 88

 Score = 40.7 bits (91), Expect = 0.007
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +2

Query: 287 GSGGMWRFYTDDSPGVEVGP 346
           G+GGMWRFY ++SPG+ VGP
Sbjct: 50  GTGGMWRFYVENSPGLRVGP 69


>UniRef50_A4RRJ9 Cluster: Predicted protein; n=1; Ostreococcus
           lucimarinus CCE9901|Rep: Predicted protein -
           Ostreococcus lucimarinus CCE9901
          Length = 76

 Score = 33.9 bits (74), Expect = 0.77
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +2

Query: 287 GSGGMWRFYTDDSPGVEVGP 346
           GSG + RFYTD+SPG+++ P
Sbjct: 25  GSGSLLRFYTDESPGLKITP 44


>UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit
           beta; n=13; Magnoliophyta|Rep: Protein transport protein
           Sec61 subunit beta - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 82

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +2

Query: 290 SGGMWRFYTDDSPGVEVGP 346
           +G M +FYTDD+PG+++ P
Sbjct: 37  AGSMLQFYTDDAPGLKISP 55


>UniRef50_UPI0001555FD0 Cluster: PREDICTED: similar to leucine-rich
           repeat kinase 1, partial; n=1; Ornithorhynchus
           anatinus|Rep: PREDICTED: similar to leucine-rich repeat
           kinase 1, partial - Ornithorhynchus anatinus
          Length = 840

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 219 PLAVRGAEVALLAHRLPDPTDVELGEGGIFILHEK 115
           P+   G E  L  H  P+P D E  E  IF+  +K
Sbjct: 417 PVTDAGPECLLTTHPTPEPQDSESSEASIFLAEQK 451


>UniRef50_Q5KKF8 Cluster: Transcriptional activator, putative; n=2;
           Filobasidiella neoformans|Rep: Transcriptional
           activator, putative - Cryptococcus neoformans
           (Filobasidiella neoformans)
          Length = 499

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 153 LHLWDLEVDGRVRLLQPHVQLAEALFVNEN 242
           + +WD+E  G VR+L+ HV+  E L  + N
Sbjct: 49  VEIWDVETRGVVRILEGHVKAVEGLSWSRN 78


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 310,045,610
Number of Sequences: 1657284
Number of extensions: 4831065
Number of successful extensions: 10001
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10000
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 11131607110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)