Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F14
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    29   0.16 
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   3.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   7.8  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    24   7.8  

>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 150 VLHLWDLEVDGRVRLLQPHVQLAEALFVNENXXXXXXXPEI 272
           V+++WD+E    VR L+ H +   AL  N+N        E+
Sbjct: 189 VIYIWDIESTKSVRSLKGHSERVAALAWNDNTLTSGGKDEV 229


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 34   VALIEIYVISNNNFLEQNCVDNFLFLIFFV*NKYASFSEFYIC--GIWKSMG 183
            V L+    I N  F+E+N  D      F   N  ASF+  +     ++KS+G
Sbjct: 1729 VELVSAISIDNETFIERNFTDTERKYCFAAPNPQASFAGRWSAKEAVFKSLG 1780


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 124  TRKILEIENYPRNFVLR 74
            +R I  I+N+P NFVLR
Sbjct: 3148 SRAISLIKNWPENFVLR 3164


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 229 SSTKIYYNYYCSQKSQHRCW 288
           S T + Y  YCS+ S   CW
Sbjct: 234 SITNLAYCGYCSKPSMGACW 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,285,800
Number of Sequences: 5004
Number of extensions: 21181
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)