Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F14
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0021 - 155700-156023                                             32   0.11 
11_01_0023 - 162079-162402                                             32   0.11 
10_08_0485 + 18235597-18236256,18236353-18236400,18236522-182366...    27   3.1  
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395...    26   7.1  
07_03_0431 - 18152041-18152085,18152368-18152685,18152927-181534...    26   9.3  

>12_01_0021 - 155700-156023
          Length = 107

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 15/55 (27%), Positives = 20/55 (36%)
 Frame = +2

Query: 182 ASKATSAPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDDSPGVEVGP 346
           A  AT  PR  +                       G   M RFYTD++PG+ + P
Sbjct: 19  ARPATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDEAPGLRLSP 73


>11_01_0023 - 162079-162402
          Length = 107

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 15/55 (27%), Positives = 20/55 (36%)
 Frame = +2

Query: 182 ASKATSAPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDDSPGVEVGP 346
           A  AT  PR  +                       G   M RFYTD++PG+ + P
Sbjct: 19  ARPATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDEAPGLRLSP 73


>10_08_0485 +
           18235597-18236256,18236353-18236400,18236522-18236644,
           18237062-18237211,18237702-18237873,18237965-18238025,
           18238129-18238237
          Length = 440

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 287 GSGGMWRFYTDDSPGVEVGP 346
           G+G     Y DD PG EVGP
Sbjct: 58  GTGADVECYVDDRPGAEVGP 77


>07_03_1723 -
           29038701-29039213,29039341-29039413,29039504-29039594,
           29039684-29039741,29039829-29039905,29040004-29040214,
           29040339-29040386,29042496-29042608,29043270-29043341,
           29044372-29046336,29046434-29046641,29046847-29047165,
           29047813-29047937,29048024-29048157,29049089-29049164,
           29049276-29049428,29049829-29050532,29050636-29050811,
           29050945-29051107,29051199-29051341,29051802-29051914,
           29053113-29053237,29053867-29054016,29054753-29054921,
           29055201-29055418,29055499-29055709
          Length = 2135

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 138 LLLRVLHLWDLEVDGRVRLLQPHVQL 215
           LLL  LH WDL V    + +  H+ L
Sbjct: 321 LLLGYLHRWDLMVTSNKKSIDEHISL 346


>07_03_0431 -
           18152041-18152085,18152368-18152685,18152927-18153482,
           18153886-18154577,18155234-18155614,18156159-18156241,
           18156618-18156786,18157498-18157543,18158301-18158389,
           18158476-18158591,18159137-18159443
          Length = 933

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 296 GMWRFYTDDSPGVEVGP 346
           G+W++  DDSPG+   P
Sbjct: 348 GLWKYLDDDSPGLGDNP 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,340,866
Number of Sequences: 37544
Number of extensions: 129540
Number of successful extensions: 231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)