Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F14
         (348 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071155-1|AAL48777.1|  100|Drosophila melanogaster RE18615p pro...    48   4e-06
AJ249754-1|CAB56698.1|  100|Drosophila melanogaster sec61beta pr...    48   4e-06
AE013599-1924|AAF58229.1|  100|Drosophila melanogaster CG10130-P...    48   4e-06
AE014297-2293|AAF55378.1|  623|Drosophila melanogaster CG4009-PA...    27   6.5  

>AY071155-1|AAL48777.1|  100|Drosophila melanogaster RE18615p
           protein.
          Length = 100

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 17/20 (85%), Positives = 20/20 (100%)
 Frame = +2

Query: 287 GSGGMWRFYTDDSPGVEVGP 346
           G+GGMWRFYTDDSPG++VGP
Sbjct: 55  GTGGMWRFYTDDSPGIKVGP 74


>AJ249754-1|CAB56698.1|  100|Drosophila melanogaster sec61beta
           protein protein.
          Length = 100

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 17/20 (85%), Positives = 20/20 (100%)
 Frame = +2

Query: 287 GSGGMWRFYTDDSPGVEVGP 346
           G+GGMWRFYTDDSPG++VGP
Sbjct: 55  GTGGMWRFYTDDSPGIKVGP 74


>AE013599-1924|AAF58229.1|  100|Drosophila melanogaster CG10130-PA
           protein.
          Length = 100

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 17/20 (85%), Positives = 20/20 (100%)
 Frame = +2

Query: 287 GSGGMWRFYTDDSPGVEVGP 346
           G+GGMWRFYTDDSPG++VGP
Sbjct: 55  GTGGMWRFYTDDSPGIKVGP 74


>AE014297-2293|AAF55378.1|  623|Drosophila melanogaster CG4009-PA
           protein.
          Length = 623

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 210 VRGAEVALLAHRLPDPTDVELGEGGIFILH 121
           + G +++LL      P DVELG GG    H
Sbjct: 519 IPGEKISLLRRLYATPDDVELGVGGTLEYH 548


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,831,164
Number of Sequences: 53049
Number of extensions: 219509
Number of successful extensions: 386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 817309116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)