Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F14
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025715-6|AAK68450.1|   81|Caenorhabditis elegans Hypothetical ...    38   0.002
AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    28   2.1  
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    28   2.1  
Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction...    26   6.4  
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction...    26   6.4  
U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical p...    26   8.5  

>AC025715-6|AAK68450.1|   81|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.9 protein.
          Length = 81

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 12/19 (63%), Positives = 18/19 (94%)
 Frame = +2

Query: 290 SGGMWRFYTDDSPGVEVGP 346
           +GG+WRFYT+DS G+++GP
Sbjct: 35  NGGLWRFYTEDSTGLKIGP 53


>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +3

Query: 153 LHLWDLEVDGRVRLLQ 200
           LHL+DLE+ G+VRL++
Sbjct: 128 LHLFDLEIPGKVRLME 143


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +3

Query: 153 LHLWDLEVDGRVRLLQ 200
           LHL+DLE+ G+VRL++
Sbjct: 128 LHLFDLEIPGKVRLME 143


>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical protein
            F16D3.4 protein.
          Length = 1232

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 347  LDPLQHQENHLYRSATCHLNQHLCC 273
            LD L  Q+  L +SA   L +HLCC
Sbjct: 1170 LDTLNSQQPVLRKSAAERLYEHLCC 1194


>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
            molecule protein1, isoform d protein.
          Length = 1439

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 232  STKIYYNYYCSQKSQHRCW 288
            S K  Y YYCS++ +H  W
Sbjct: 1258 SCKHCYTYYCSRECRHNNW 1276


>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
            molecule protein1, isoform a protein.
          Length = 1480

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 232  STKIYYNYYCSQKSQHRCW 288
            S K  Y YYCS++ +H  W
Sbjct: 1299 SCKHCYTYYCSRECRHNNW 1317


>U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical
           protein C56C10.1 protein.
          Length = 617

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 159 LWDLEVDGRVRLLQPHVQLAEAL 227
           +W++E+D RV  L+P+V+ A  +
Sbjct: 76  VWNIEIDQRVFFLRPNVENARKI 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,169,251
Number of Sequences: 27780
Number of extensions: 121120
Number of successful extensions: 252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)