Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F13
         (196 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   0.25 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   3.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    19   4.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    19   5.4  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    19   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    19   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   7.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    18   9.4  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 0.25
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 67  QRQATKDAGVIAGLNVMRIINEPTAAAIAYG 159
           Q +A K A ++   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 90  GIFSGLALGVVEVSRYSYNSMSNFPS 13
           GIF  L   +   + Y Y+    FP+
Sbjct: 343 GIFGALMAALATEASYDYSLYEIFPA 368


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 16  GKVTHAVVTVPAYFNDAQRQ 75
           G + HA++T+P  F    RQ
Sbjct: 322 GLLFHALITLPTIFWFLTRQ 341


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 127 NEPTAAAIAYG 159
           + PTAA I+YG
Sbjct: 122 SHPTAAFISYG 132



 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -2

Query: 189 YVFLSIPLLKTVGDGG 142
           Y+++ + +L+   DGG
Sbjct: 98  YIYILMAILRMSADGG 113


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 127 NEPTAAAIAYG 159
           + PTAA I+YG
Sbjct: 121 SHPTAAFISYG 131



 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -2

Query: 189 YVFLSIPLLKTVGDGG 142
           Y+++ + +L+   DGG
Sbjct: 97  YIYILMAILRMSADGG 112


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = +3

Query: 27 SCCCNC 44
          SCCC C
Sbjct: 10 SCCCWC 15


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +1

Query: 1   LNSARGKVTHAVVTVPAYFNDAQRQATKDAGVIAGLN 111
           + S  GKV    V    YF    R  T   G  A L+
Sbjct: 792 IGSGIGKVVQLKVNSSPYFAAPSRLVTVKKGDTATLH 828


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +1

Query: 1   LNSARGKVTHAVVTVPAYFNDAQRQATKDAGVIAGLN 111
           + S  GKV    V    YF    R  T   G  A L+
Sbjct: 788 IGSGIGKVVQLKVNSSPYFAAPSRLVTVKKGDTATLH 824


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 91  GVIAGLNVMRIINEPTAAAIAYGLEKRD 174
           GV+ G  V  +   P   ++ Y  ++RD
Sbjct: 493 GVLHGDEVEYVFGHPLNKSLKYSDKERD 520


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 25  THAVVTVPAYFN 60
           T  ++ VPAY N
Sbjct: 200 TWDIINVPAYLN 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.131    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,441
Number of Sequences: 438
Number of extensions: 583
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2541420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)