Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F12
(423 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 57 1e-09
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 57 1e-09
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 57 1e-09
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 57 1e-09
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 57 1e-09
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 57 1e-09
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 57 1e-09
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 57 1e-09
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 57 1e-09
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 57 1e-09
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 57 1e-09
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 29 0.30
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 1.2
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 27 1.6
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 25 6.4
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 24 8.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 24 8.5
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 24 8.5
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 24 8.5
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 24 8.5
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 57.2 bits (132), Expect = 1e-09
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +2
Query: 86 LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTK-SPVHAFTPPTSRF 262
L HPG + +I R+ W IRK + + + C C K H P+ P +
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
Query: 263 SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAF 406
+ +D I LP S+G+ VDRF++ ++ + I AE A+ F
Sbjct: 985 ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMF 1033
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 57.2 bits (132), Expect = 1e-09
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +2
Query: 86 LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTK-SPVHAFTPPTSRF 262
L HPG + +I R+ W IRK + + + C C K H P+ P +
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
Query: 263 SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAF 406
+ +D I LP S+G+ VDRF++ ++ + I AE A+ F
Sbjct: 985 ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMF 1033
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 57.2 bits (132), Expect = 1e-09
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +2
Query: 86 LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTK-SPVHAFTPPTSRF 262
L HPG + +I R+ W IRK + + + C C K H P+ P +
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
Query: 263 SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAF 406
+ +D I LP S+G+ VDRF++ ++ + I AE A+ F
Sbjct: 985 ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMF 1033
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 57.2 bits (132), Expect = 1e-09
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +2
Query: 86 LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTK-SPVHAFTPPTSRF 262
L HPG + +I R+ W IRK + + + C C K H P+ P +
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
Query: 263 SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAF 406
+ +D I LP S+G+ VDRF++ ++ + I AE A+ F
Sbjct: 985 ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMF 1033
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 57.2 bits (132), Expect = 1e-09
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +2
Query: 86 LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTK-SPVHAFTPPTSRF 262
L HPG + +I R+ W IRK + + + C C K H P+ P +
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
Query: 263 SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAF 406
+ +D I LP S+G+ VDRF++ ++ + I AE A+ F
Sbjct: 985 ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMF 1033
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 57.2 bits (132), Expect = 1e-09
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +2
Query: 86 LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTK-SPVHAFTPPTSRF 262
L HPG + +I R+ W IRK + + + C C K H P+ P +
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
Query: 263 SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAF 406
+ +D I LP S+G+ VDRF++ ++ + I AE A+ F
Sbjct: 985 ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMF 1033
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 57.2 bits (132), Expect = 1e-09
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +2
Query: 86 LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTK-SPVHAFTPPTSRF 262
L HPG + +I R+ W IRK + + + C C K H P+ P +
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
Query: 263 SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAF 406
+ +D I LP S+G+ VDRF++ ++ + I AE A+ F
Sbjct: 985 ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMF 1033
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 57.2 bits (132), Expect = 1e-09
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +2
Query: 86 LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTK-SPVHAFTPPTSRF 262
L HPG + +I R+ W IRK + + + C C K H P+ P +
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
Query: 263 SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAF 406
+ +D I LP S+G+ VDRF++ ++ + I AE A+ F
Sbjct: 985 ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMF 1033
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 57.2 bits (132), Expect = 1e-09
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +2
Query: 86 LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTK-SPVHAFTPPTSRF 262
L HPG + +I R+ W IRK + + + C C K H P+ P +
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
Query: 263 SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAF 406
+ +D I LP S+G+ VDRF++ ++ + I AE A+ F
Sbjct: 985 ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMF 1033
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 57.2 bits (132), Expect = 1e-09
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +2
Query: 86 LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTK-SPVHAFTPPTSRF 262
L HPG + +I R+ W IRK + + + C C K H P+ P +
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
Query: 263 SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAF 406
+ +D I LP S+G+ VDRF++ ++ + I AE A+ F
Sbjct: 985 ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMF 1033
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 57.2 bits (132), Expect = 1e-09
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +2
Query: 86 LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTK-SPVHAFTPPTSRF 262
L HPG + +I R+ W IRK + + + C C K H P+ P +
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
Query: 263 SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI-ALEDIKAETVAKAF 406
+ +D I LP S+G+ VDRF++ ++ + I AE A+ F
Sbjct: 985 ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMF 1033
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 29.1 bits (62), Expect = 0.30
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 158 DCRLWTRTCVDCHCAKVTRHTKSPVHAFT 244
DC+L+ ++ D C KV RHTK+ F+
Sbjct: 408 DCKLYWQSNGDYLCVKVDRHTKTKKSTFS 436
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 1.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 423 DIQSLMKAFATVSALISSKAMTSGQRVNRSTAVKQYLKPFEIGS 292
DI L + +T + L+ S+ + ST K YLKP E GS
Sbjct: 761 DILKLPQPISTWNKLLDSECHRNPNMEFLSTFSKNYLKPQEFGS 804
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 196 LCKSYTPHEVASACIYTTN-EQIFSCTCRYYWT 291
L K + PH SA I + IF+C R+YW+
Sbjct: 102 LVKKFGPHYYLSAMIIGWSLVTIFTCFVRHYWS 134
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 24.6 bits (51), Expect = 6.4
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +2
Query: 194 HCAKVTRHTKSPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVD 337
H + T H+ S +HA T + ++ V L G K +T++D
Sbjct: 72 HLGRFTHHSNSLIHASTKEDNTVRYLDVVTNRYLRYFPGHKQTVTSID 119
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 24.2 bits (50), Expect = 8.5
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -3
Query: 205 FCTMT---VNTSTSPKSAVFTYIGPYIPCCYQLD 113
FC ++ +T+ P+S+V+T G + C Y+ +
Sbjct: 200 FCILSGDLASTNIGPRSSVYTEPGNLLACKYEFE 233
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.2 bits (50), Expect = 8.5
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = +2
Query: 203 KVTRHTKSPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCL 325
K H +P F P T +S + + P+ NG+ L
Sbjct: 355 KALSHLVAPSFYFNPSTKGYSSIDFTLSSPVMPINGYSVSL 395
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 8.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 283 NIDMYMRKSARWWCKCMHWRLRVACNFC 200
N+D +++ SARW + + R NFC
Sbjct: 145 NMDPFLKGSARWTAEHWDYLERRMQNFC 172
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 24.2 bits (50), Expect = 8.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 14 TSGTSPRLYLPSEFRRQAFDTIHGLN 91
+SGT P Y+P+ F D +G N
Sbjct: 35 SSGTFPERYVPTVFENYITDITYGPN 60
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 24.2 bits (50), Expect = 8.5
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +2
Query: 125 TARYVWPNIRKDCRLWT----RTCVDCHCAKVTRHTKSPVHAFTPPTSRFSHVHVDIIGP 292
T ++ W + RL T C++C AKV T+ P + P S V + +GP
Sbjct: 248 TIQFNWERAKVFDRLTTMIILENCLECKTAKVVNITQKPKTKYKP--LPLSTVELTKLGP 305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,133
Number of Sequences: 5004
Number of extensions: 36620
Number of successful extensions: 125
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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