Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F12
(423 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 81 6e-16
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 81 6e-16
AY095181-1|AAM12274.1| 320|Drosophila melanogaster GM07634p pro... 81 6e-16
AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein. 77 7e-15
AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p pro... 77 1e-14
AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein ... 77 1e-14
AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed... 77 1e-14
S68526-1|AAD14015.2| 624|Drosophila melanogaster pol polyprotei... 73 2e-13
AY089271-1|AAL90009.1| 451|Drosophila melanogaster AT07338p pro... 58 4e-09
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. 57 8e-09
AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 38 0.004
AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ... 35 0.039
X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros... 35 0.052
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. 35 0.052
AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein ... 34 0.068
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 34 0.068
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros... 32 0.27
AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed... 32 0.27
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 32 0.36
AY069353-1|AAL39498.1| 696|Drosophila melanogaster LD05963p pro... 30 1.1
AE014134-2323|AAF53277.1| 696|Drosophila melanogaster CG6116-PA... 30 1.1
AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA... 28 4.5
AL138972-1|CAB72284.1| 1035|Drosophila melanogaster EG:BACR25B3.... 28 5.9
AE014298-406|AAN09078.1| 4228|Drosophila melanogaster CG33950-PE... 28 5.9
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 81.0 bits (191), Expect = 6e-16
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Frame = +2
Query: 71 DTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTKSPVHAFTPP 250
D I G H G T+ + Y W N+ K + + R C C AK T+HTK+P+ P
Sbjct: 903 DPIQG-GHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMTITETP 961
Query: 251 TSRFSHVHVDIIGPLPIS-NGFKYCLTAVDRFTRWPEVIALEDIKAETVAKAFIRDWI 421
F V VD IGPLP S NG +Y +T + T++ I + + A+TVAKA +I
Sbjct: 962 EHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANKSAKTVAKAIFESFI 1019
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent DNA
polymerase protein.
Length = 1000
Score = 81.0 bits (191), Expect = 6e-16
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Frame = +2
Query: 71 DTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTKSPVHAFTPP 250
D I G H G T+ + Y W N+ K + + R C C AK T+HTK+P+ P
Sbjct: 666 DPIQG-GHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMTITETP 724
Query: 251 TSRFSHVHVDIIGPLPIS-NGFKYCLTAVDRFTRWPEVIALEDIKAETVAKAFIRDWI 421
F V VD IGPLP S NG +Y +T + T++ I + + A+TVAKA +I
Sbjct: 725 EHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANKSAKTVAKAIFESFI 782
>AY095181-1|AAM12274.1| 320|Drosophila melanogaster GM07634p
protein.
Length = 320
Score = 81.0 bits (191), Expect = 6e-16
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Frame = +2
Query: 71 DTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTKSPVHAFTPP 250
D I G H G T+ + Y W N+ K + + R C C AK T+HTK+P+ P
Sbjct: 54 DPIQG-GHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMTITETP 112
Query: 251 TSRFSHVHVDIIGPLPIS-NGFKYCLTAVDRFTRWPEVIALEDIKAETVAKAFIRDWI 421
F V VD IGPLP S NG +Y +T + T++ I + + A+TVAKA +I
Sbjct: 113 EHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANKSAKTVAKAIFESFI 170
>AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein.
Length = 994
Score = 77.4 bits (182), Expect = 7e-15
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Frame = +2
Query: 71 DTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTKSPVHAFTPP 250
D I G H G T I Y WP + K + +TC+ C AK+T HTK+P+ P
Sbjct: 661 DPIEG-GHTGISRTQSKIKRFYYWPQMTKTISKYVKTCLKCQQAKITTHTKTPLTLMPTP 719
Query: 251 TSRFSHVHVDIIGPLPIS-NGFKYCLTAVDRFTRWPEVIALEDIKAETVAKA 403
+ F V +D IGPLP S +G +Y +T + T++ I + A+TVAKA
Sbjct: 720 ATAFDTVLIDTIGPLPKSEDGNEYAVTIICDLTKFLVTIPTPNKSAKTVAKA 771
>AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p
protein.
Length = 370
Score = 76.6 bits (180), Expect = 1e-14
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Frame = +2
Query: 71 DTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTKSPVHAFTPP 250
D I G H G T+ I Y W N+ + + + R C C +K T HTK+P+ P
Sbjct: 36 DPIQG-GHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTKTPLTYTETP 94
Query: 251 TSRFSHVHVDIIGPLPISN-GFKYCLTAVDRFTRWPEVIALEDIKAETVAKAFIRDWI 421
T+ F V VD +GPLP S G +Y +T + T++ I + + A TVAKA ++I
Sbjct: 95 TNAFDIVIVDTVGPLPKSEYGNEYIVTLICDLTKYLVTIPVANKSANTVAKAIFENFI 152
>AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein
protein.
Length = 826
Score = 76.6 bits (180), Expect = 1e-14
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Frame = +2
Query: 71 DTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTKSPVHAFTPP 250
D I G H G T+ I Y W N+ + + + R C C +K T HTK+P+ P
Sbjct: 492 DLIQG-GHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTKTPLTYTETP 550
Query: 251 TSRFSHVHVDIIGPLPISN-GFKYCLTAVDRFTRWPEVIALEDIKAETVAKAFIRDWI 421
T+ F V VD +GPLP S G +Y +T + T++ I + + A TVAKA ++I
Sbjct: 551 TNAFDIVIVDTVGPLPKSEYGNEYIVTLICDLTKYLVTIPVANKSANTVAKAIFENFI 608
>AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 826
Score = 76.6 bits (180), Expect = 1e-14
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Frame = +2
Query: 71 DTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTKSPVHAFTPP 250
D I G H G T+ I Y W N+ + + + R C C +K T HTK+P+ P
Sbjct: 492 DPIQG-GHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTKTPLTYTETP 550
Query: 251 TSRFSHVHVDIIGPLPISN-GFKYCLTAVDRFTRWPEVIALEDIKAETVAKAFIRDWI 421
T+ F V VD +GPLP S G +Y +T + T++ I + + A TVAKA ++I
Sbjct: 551 TNAFDIVIVDTVGPLPKSEYGNEYIVTLICDLTKYLVTIPVANKSANTVAKAIFENFI 608
>S68526-1|AAD14015.2| 624|Drosophila melanogaster pol polyprotein
protein.
Length = 624
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Frame = +2
Query: 92 HPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTKSPVHAFTPPTSRFSHV 271
H G T++ + WP + K + TC+ C +K T+HTK+P+ P + F V
Sbjct: 296 HSGISRTLRKMKNCCCWPRMTKAISEYVETCLKCQQSKTTKHTKTPLTITETPATAFDIV 355
Query: 272 HVDIIGPLPIS-NGFKYCLTAVDRFTRWPEVIALEDIKAETVAKAFIRDWI 421
+D IGPLP S NG +Y +T + T++ + + + A++VAKA ++I
Sbjct: 356 LIDTIGPLPRSENGNEYAVTIICDLTKYLVTVPIPNKSAKSVAKAVFENFI 406
>AY089271-1|AAL90009.1| 451|Drosophila melanogaster AT07338p
protein.
Length = 451
Score = 58.4 bits (135), Expect = 4e-09
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +2
Query: 128 ARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTKSPVHAFTPPTSRFSHVHVDIIGPLPIS- 304
ARY WP + + R + R C C K ++ + P ++ V D +GPLP S
Sbjct: 118 ARYYWPGMHRGVRKYVRNCECCMMYKPSQLQAAGKMLTQVPEEPWATVCADFVGPLPRSK 177
Query: 305 NGFKYCLTAVDRFTRWPEVIALEDIKAETVAKA 403
+G L VDRF++W E++ + ET+ KA
Sbjct: 178 HGNSMLLVLVDRFSKWTEIVPMRRATTETMRKA 210
>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
Length = 1494
Score = 57.2 bits (132), Expect = 8e-09
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Frame = +2
Query: 38 YLPSEFRRQAFDTIHG-LNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDC-HCAKVT 211
Y+P E Q H L H G I+ I Y +PN+++ C C+ C + T
Sbjct: 1192 YVPIEMEEQVLYKYHNELGHVGRDKMIEAIMKNYWFPNLKQKCSTHISNCLKCISFSPKT 1251
Query: 212 RHTKSPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVIALEDIKAET 391
T+ +H F +H+D GP+ ++ K+ L VD FT++ + A + +
Sbjct: 1252 GKTEGFLHNIPKGNKPFEIIHIDHYGPVDLARPKKHILVIVDAFTKFVRLYATKTTNTKE 1311
Query: 392 VAKA 403
V ++
Sbjct: 1312 VIQS 1315
>AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein
protein.
Length = 849
Score = 38.3 bits (85), Expect = 0.004
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Frame = +2
Query: 47 SEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVT-RHTK 223
+ F+ +T L HPG + T+KL + Y +PN + + C C+ AK R+T+
Sbjct: 711 ASFKELILNTHEKLLHPGIQKTVKLFSENYYFPNSQLLIQNIINECQVCNLAKTEHRNTE 770
Query: 224 SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVIALEDIKAE 388
P+ P +DI S G Y L+ +D ++++ LE IK +
Sbjct: 771 MPMKITPKPEHCRDKFVIDIYS----SEGNHY-LSCIDIYSKF---ATLEQIKTK 817
>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
protein.
Length = 1006
Score = 35.1 bits (77), Expect = 0.039
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 47 SEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVT-RHTK 223
+EF+ + L HPG + T KL + Y +PN + + C C+ AK R+TK
Sbjct: 695 AEFKELILQSHEKLLHPGIQKTKKLFSENYFFPNSQLQIQNIINECQVCNLAKSEHRNTK 754
Query: 224 SP 229
P
Sbjct: 755 VP 756
>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
Drosophila melanogastercopia-like element 17.6. ).
Length = 1058
Score = 34.7 bits (76), Expect = 0.052
Identities = 29/114 (25%), Positives = 51/114 (44%)
Frame = +2
Query: 47 SEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTKS 226
+EF+ L HPG + T KL Y +PN + + C C+ AK T H +
Sbjct: 748 AEFKELILTAHEKLLHPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAK-TEHRNT 806
Query: 227 PVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVIALEDIKAE 388
+ T P + H + + S G K+ ++ +D ++++ LE+IK +
Sbjct: 807 DMPTKTTP--KPEHCREKFMIDIYSSEG-KHYVSCIDIYSKF---ATLEEIKTK 854
>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
Length = 1003
Score = 34.7 bits (76), Expect = 0.052
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +2
Query: 80 HGLNHPGAKTTIKL-ITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTKSPVHAFTP-PT 253
H H G T I+L + +Y +P + RL T +C C K RH P TP P
Sbjct: 701 HRRAHRGP-TEIRLQLLEKYYFPRMSSTIRLQTSSCQCCKLYKYERHPNKPNLQPTPIPN 759
Query: 254 SRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVIALE 373
+H+DI + + L+ +D+F+++ ++ L+
Sbjct: 760 YPCEILHIDI-----FALEKRLYLSCIDKFSKFAKLFHLQ 794
>AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein
protein.
Length = 1150
Score = 34.3 bits (75), Expect = 0.068
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +2
Query: 47 SEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTKS 226
+EF+ L HPG + TI L Y +P+ +K + C C+ AK T H
Sbjct: 828 AEFKDLILKKHKELLHPGIEKTINLFKEEYYYPDSQKLIQTIINECQICYLAK-TEHQTQ 886
Query: 227 PVHAFTP 247
+ TP
Sbjct: 887 MTYETTP 893
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 34.3 bits (75), Expect = 0.068
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Frame = +2
Query: 89 NHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTKSPVHAFTP--PTSRF 262
NH G T + +PN++ R C C K R ++ V TP P+
Sbjct: 869 NHRGIDETFLHLKRETYFPNMKNKISELIRNCETCLKLKYDRQPQNIVFE-TPETPSKPL 927
Query: 263 SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVIALEDIKAETVAKA 403
+H+DI I+N F LT +D+F+++ V + + KA
Sbjct: 928 DIIHIDI---YTINNNFN--LTIIDKFSKFAAVYPIPNRNGINCIKA 969
>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
Drosophila melanogastertransposable element 297. ).
Length = 1059
Score = 32.3 bits (70), Expect = 0.27
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +2
Query: 47 SEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVT-RHTK 223
+EF+ + L HPG + KL + +PN + + C C+ AK R+TK
Sbjct: 748 AEFKEIILQSHEKLLHPGIQKMTKLFKENHFFPNSQLLIQNIINECNICNLAKTEHRNTK 807
Query: 224 SPVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVIALEDIKAE 388
P+ P H + + S G K+ ++ +D ++++ LE IK +
Sbjct: 808 MPLKITPNP----EHCREKFVVDIYSSEG-KHYISCIDIYSKF---ATLEQIKTK 854
>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed DNA
polymerase protein.
Length = 1065
Score = 32.3 bits (70), Expect = 0.27
Identities = 25/106 (23%), Positives = 46/106 (43%)
Frame = +2
Query: 47 SEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKVTRHTKS 226
SEF+ + L HPG + L +Y +P+ +K + C C+ +K
Sbjct: 748 SEFKEIIIKSHRELLHPGIEKQTNLFKEKYYYPDYQKLIQNIINECEVCNISKTEHRDTK 807
Query: 227 PVHAFTPPTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVI 364
+ TP T F+ +I I+N K L+ +D ++++ +I
Sbjct: 808 LRYELTPET--FNPREKYVIDFYLINN--KTFLSCIDIYSKYAALI 849
>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
transcriptase protein.
Length = 1088
Score = 31.9 bits (69), Expect = 0.36
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 1/126 (0%)
Frame = +2
Query: 29 PRLYLPSEFRRQAFDTIHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCAKV 208
P + +E + D + NH G T I + +P++++ R C C K
Sbjct: 738 PEITDSTEIEKIITDYHYNSNHRGIDETYLHIKRQQFFPHMKERITQLIRKCETCLKLKY 797
Query: 209 TRHTKSPVHAFTP-PTSRFSHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVIALEDIKA 385
R + + + P+ +H+DI + Y LT +D+F+++ + +
Sbjct: 798 DRQPQKITYQISELPSKPLDILHIDI-----YTINKNYNLTIIDKFSKFAAAYPITNRNC 852
Query: 386 ETVAKA 403
V KA
Sbjct: 853 INVVKA 858
>AY069353-1|AAL39498.1| 696|Drosophila melanogaster LD05963p
protein.
Length = 696
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = +2
Query: 140 WPNIRKDCRLWTRTCVDCHCAKVTRHTKSPVHAFTPPTSRFSHVHVDIIG 289
W I D W +T C C KV +H + PP H D+ G
Sbjct: 78 WAEICTDDEAWRKTNAQCVCVKVWKHYSAERRDGQPP--EVEQRHKDVFG 125
>AE014134-2323|AAF53277.1| 696|Drosophila melanogaster CG6116-PA
protein.
Length = 696
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = +2
Query: 140 WPNIRKDCRLWTRTCVDCHCAKVTRHTKSPVHAFTPPTSRFSHVHVDIIG 289
W I D W +T C C KV +H + PP H D+ G
Sbjct: 78 WAEICTDDEAWRKTNAQCVCVKVWKHYSAERRDGQPP--EVEQRHKDVFG 125
>AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA
protein.
Length = 2733
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 3 TRVTHLVRLLVYTYLQSFDDKPLIQSMDSIILEL 104
T+ HL+ +++ +L+ F+ +PL Q + S+I +L
Sbjct: 477 TKEEHLLLIILVPHLRGFNKQPLEQGLQSVIEKL 510
>AL138972-1|CAB72284.1| 1035|Drosophila melanogaster EG:BACR25B3.11
protein.
Length = 1035
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 387 SALISSKAMTSGQRVNRSTAVKQYLKPFEIGSGPIISTCT*ENLLVGGVNACT 229
S L S+K + SG R+ A+ +P + TC N++ G+ CT
Sbjct: 55 SKLSSAKPIISGPATTRAPAISYVCQPNDFKCVSHPHTCVRANMVCDGIYDCT 107
>AE014298-406|AAN09078.1| 4228|Drosophila melanogaster CG33950-PE,
isoform E protein.
Length = 4228
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 387 SALISSKAMTSGQRVNRSTAVKQYLKPFEIGSGPIISTCT*ENLLVGGVNACT 229
S L S+K + SG R+ A+ +P + TC N++ G+ CT
Sbjct: 3218 SKLSSAKPIISGPATTRAPAISYVCQPNDFKCVSHPHTCVRANMVCDGIYDCT 3270
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,875,395
Number of Sequences: 53049
Number of extensions: 406491
Number of successful extensions: 1164
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1292733852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -